Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_05325	PS417_05330	PS417_05335	PS417_05340	PS417_05345
phage	P. simiae OR1 MOI 0.1	-1.3	-0.4	-0.5	N.D.	-1.0
solid stress	Fraxetin 2 mM; solid stress	-2.4	-0.1	+0.1	N.D.	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-1.1	+0.1	-0.1	N.D.	-0.7
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-2.4	+0.5	+0.3	N.D.	-0.2
stress	R2A with Fusaric 120 ug/mL	-1.2	-0.0	+0.0	N.D.	-0.5
phage	JP1 MOI 10	-0.8	-0.1	+0.5	N.D.	-1.0
carbon source	L-Valine (C)	-1.2	+0.1	-0.3	N.D.	-0.0
phage	Wcs_0.1	-1.4	-0.1	+0.1	N.D.	+0.0
liquid stress	Fraxetin 2 mM; liquid stress	-1.3	-0.1	-0.1	N.D.	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.3	-0.2	-0.1	N.D.	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.7	+0.3	+0.3	N.D.	-1.1
soil	soil sample 7; outgrowth in LB	-1.1	+0.2	-0.2	N.D.	+0.0
solid stress	Scopoletin 3 mM; solid stress	-1.2	+0.1	+0.1	N.D.	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.5	-0.0	+0.3	N.D.	+0.4
phage	P. simiae ORA MOI 0.1	-1.5	-0.2	+0.1	N.D.	+0.8
motility	outer cut, LB soft agar motility assay	-0.9	-0.2	-0.2	N.D.	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.6	-0.2	+0.0	N.D.	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.6	+0.0	-0.1	N.D.	-0.8
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.6	-0.1	-0.1	N.D.	-0.8
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.6	+0.0	-0.5	N.D.	+0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	+0.2	+0.1	N.D.	-1.0
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.7	+0.2	-0.3	N.D.	-0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	+0.2	-0.1	N.D.	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.8	+0.1	+0.3	N.D.	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.9	-0.1	-0.2	N.D.	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.7	+0.1	+0.0	N.D.	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.0	-0.3	N.D.	+1.1
root	root sample 6; outgrowth in LB	-0.8	+0.2	+0.8	N.D.	+0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.4	+0.2	+0.4	N.D.	+0.7
seeds	Growth on radish seeds for 72 hours	+1.5	+0.1	+0.2	N.D.	-0.0