Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_05295	PS417_05300	PS417_05305	PS417_05310	PS417_05315
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.1	-0.3	+0.1	-0.7	-0.4
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	-0.0	-0.7	-0.0	-0.3	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.2	-0.7	-0.1	-0.4	-0.1
soil	soil sample 3; outgrowth in LB	+0.1	-0.4	-0.2	-0.7	+0.2
solid stress	Fraxetin 3 mM; solid stress	-0.2	-0.6	+0.2	-0.3	-0.0
stress	LB_noSalt with Chloride 1100 mM	-0.2	-0.7	+0.0	+0.2	+0.1
soil	soil sample 2; outgrowth in LB	+0.2	-0.5	-0.2	-0.5	+0.4
soil	soil sample 5; outgrowth in LB	+0.3	-0.4	-0.1	-0.5	+0.2
motility	inner cut, LB soft agar motility assay	+0.2	-0.4	-0.2	-0.4	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	-0.7	+0.2	-0.2	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.3	-0.3	+0.0	-0.4	+0.2
soil	soil sample 4; outgrowth in LB	+0.1	-0.7	-0.2	+0.2	+0.6
phage	P. simiae OR1 MOI 0.1	-0.2	-0.2	+0.2	-0.3	+0.5
seeds	Growth on radish seeds for 72 hours	+0.6	-0.1	+0.2	-0.4	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	-0.1	+0.0	+0.4	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.2	+0.2	+0.7	+0.1
seeds	Growth on radish seeds for 72 hours	+0.7	-0.1	+0.3	-0.4	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.3	-0.0	+0.2	+0.4	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.2	-0.2	+0.3	+0.9	-0.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.3	+0.2	+0.2	-0.3	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.3	+0.1	-0.3	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.2	-0.0	+0.8	+0.1
stress	Gentamicin 0.008 mg/ml	+0.4	+0.2	+0.0	-0.4	+0.7
stress	1-ethyl-3-methylimidazolium acetate 35 mM	+0.2	+1.1	+0.1	-0.0	+0.0
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-0.1	+0.2	+0.9	+0.3
carbon source	2'-Deoxyinosine 5 mM (C)	+0.6	+0.2	+0.2	+0.3	+0.2
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.6	+0.1	-0.0	+0.6	+0.4
phage	P. simiae OR Antrim MOI 1	+0.4	+0.1	+0.3	+0.7	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.5	+0.3	+0.5	-0.2	+0.6
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.1	+0.2	+1.8	+0.2