Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_05250	PS417_05255	PS417_05260	PS417_05265	PS417_05270
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.2	-0.7	-0.3	N.D.	-0.5
soil	soil sample 5; outgrowth in LB	-0.4	-0.1	-0.1	N.D.	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	-0.2	-0.3	N.D.	-0.6
solid stress	Scopoletin 1 mM; solid stress	-0.5	+0.0	-0.2	N.D.	-0.5
carbon source	2'-Deoxyinosine 5 mM (C)	-0.5	-0.2	-0.4	N.D.	+0.1
phage	P. simiae Grant Run MOI 10	-0.1	-0.6	+0.3	N.D.	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	-0.4	-0.4	N.D.	-0.5
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.2	-0.5	-0.2	N.D.	-0.3
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.3	-0.4	-0.2	N.D.	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	-0.7	+0.1	N.D.	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-0.2	-0.1	N.D.	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+0.5	+0.1	N.D.	-0.7
phage	P. simiae OR Antrim MOI 0.1	-0.3	+0.4	+0.0	N.D.	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.2	-0.0	N.D.	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.4	-0.4	+0.1	N.D.	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-0.5	-0.2	N.D.	-0.1
phage	P. simiae OR Antrim MOI 0.1	-0.2	+0.3	+0.2	N.D.	-0.6
stress	Nalidixic 0.025 mg/ml	-0.3	+0.4	+0.2	N.D.	-0.5
stress	Gentamicin 0.008 mg/ml	-0.8	+0.4	+0.1	N.D.	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.4	-0.3	N.D.	-0.3
carbon source	Carbon source D-Mannitol 10 mM	-0.4	+0.5	-0.0	N.D.	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.3	+0.0	-0.2	N.D.	+0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.4	+0.4	N.D.	-0.2
phage	JP1 MOI 1	-0.4	+0.1	+0.4	N.D.	+0.4
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.4	+0.3	+0.3	N.D.	-0.3
exudates	RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x	-0.3	+0.8	+0.1	N.D.	+0.2
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-0.2	+0.6	+0.1	N.D.	+0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.5	-0.2	+0.3	N.D.	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.4	+0.1	N.D.	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	+0.8	+0.1	N.D.	-0.1