Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_05240	PS417_05245	PS417_05250	PS417_05255	PS417_05260
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-0.4	N.D.	-0.1	-0.5	-0.2
carbon source	2'-Deoxyinosine 5 mM (C)	+0.0	N.D.	-0.5	-0.2	-0.4
seeds	Growth on radish seeds for 72 hours	-0.4	N.D.	-0.2	-0.4	+0.1
carbon source	2'-Deoxyinosine 5 mM (C)	+0.2	N.D.	-0.5	-0.6	-0.1
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.0	N.D.	+0.2	-0.7	-0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.4	N.D.	+0.2	-0.3	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	N.D.	-0.2	-0.7	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	N.D.	-0.1	-0.4	+0.2
stress	Cisplatin 0.01 mg/ml	-1.2	N.D.	+0.5	-0.0	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	N.D.	-0.1	-0.2	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	N.D.	+0.4	-0.5	-0.2
phage	P. simiae Grant Run MOI 10	+0.2	N.D.	-0.1	-0.6	+0.3
stress	Gentamicin 0.008 mg/ml	+0.1	N.D.	-0.8	+0.4	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	N.D.	+0.5	-0.4	-0.4
supernatant	LB 0.5x with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x	-0.3	N.D.	-0.4	+0.5	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	N.D.	-0.4	+0.5	+0.1
seeds	Growth on radish seeds for 72 hours	-0.4	N.D.	+0.2	-0.3	+0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.5	N.D.	+0.5	-0.2	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	N.D.	-0.2	-0.3	+0.3
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.3	N.D.	+0.2	+0.5	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	N.D.	-0.3	+0.4	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	N.D.	+0.4	+0.4	-0.3
exudates	RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x	-0.1	N.D.	-0.3	+0.8	+0.1
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.2	N.D.	+0.0	+0.8	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	N.D.	+0.4	+0.8	+0.1
stress	methylglyoxal 0.032 vol%	+0.4	N.D.	-0.1	+0.6	+0.1
liquid stress	Fraxetin 3 mM; liquid stress	+0.9	N.D.	+0.1	-0.0	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5	N.D.	+0.1	+0.4	+0.3
carbon source	D-Glucose-6-Phosphate (C)	+2.4	N.D.	-0.1	+0.2	-0.0
carbon source	D-Glucose-6-Phosphate (C)	+4.2	N.D.	+0.1	-0.0	+0.0