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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF1029 and GFF1030 are separated by 146 nucleotides
GFF1030 and GFF1031 are separated by 84 nucleotides
GFF1031 and GFF1032 are separated by 46 nucleotides
GFF1032 and GFF1033 are separated by 132 nucleotides
GFF1029 - CHRD domain containing protein, at 343,872 to 344,321
GFF1029
GFF1030 - Ferredoxin reductase, at 344,468 to 345,598
GFF1030
GFF1031 - Acetoacetate decarboxylase (EC 4.1.1.4), at 345,683 to 346,432
GFF1031
GFF1032 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 346,479 to 347,261
GFF1032
GFF1033 - Histone acetyltransferase HPA2 and related acetyltransferases, at 347,394 to 348,335
GFF1033
Group
Condition
GFF1029
GFF1030
GFF1031
GFF1032
GFF1033
complex community
Community=arabino-guar; Passage=4
-0.6
-0.5
-0.1
-0.1
-0.3
complex community
Community=Kojac gum; Passage=4
-0.0
-0.8
-0.0
+0.0
-0.2
phage
phage_bap4
-0.4
-0.4
-0.0
-0.1
-0.1
complex community
Community=guar; Passage=4
-0.6
-0.3
-0.0
-0.0
-0.0
complex community
Community=guar; Passage=4
-0.4
-0.4
+0.2
-0.1
-0.3
complex community
Community=Locust bean gum; Passage=4
-0.5
-0.4
-0.0
+0.0
-0.0
complex community
Community=Locust bean gum; Passage=1
-0.3
-0.3
-0.0
-0.1
-0.1
phage
phage_bap4
-0.3
-0.3
+0.1
-0.1
-0.2
phage
phage_bap4
-0.3
-0.3
-0.1
-0.0
-0.1
no phage control
no phage control
-0.2
-0.4
+0.0
-0.1
-0.0
complex community
Community=Kojac gum; Passage=1
-0.2
-0.3
+0.1
-0.1
-0.2
complex community
Community=arabino-guar; Passage=4
-0.2
-0.6
-0.2
+0.3
+0.1
complex community
Community=guar; Passage=4
-0.0
-0.1
+0.1
-0.2
-0.4
phage
phage_bap4
-0.4
-0.3
+0.0
+0.0
-0.0
phage
phage_bap4
-0.1
-0.4
+0.0
-0.1
-0.0
complex community
Community=Locust bean gum; Passage=4
-0.1
-0.5
+0.1
+0.0
-0.0
phage
phage_bap4
-0.3
-0.3
+0.1
+0.1
-0.0
complex community
Community=Locust bean gum; Passage=4
-0.3
-0.6
+0.4
+0.1
+0.1
complex community
Community=arabino-guar; Passage=4
+0.2
-0.3
+0.1
-0.0
-0.3
phage
phage_bap4
-0.2
-0.3
-0.0
+0.1
+0.0
complex community
Community=arabino-guar; Passage=4
-0.2
-0.2
+0.3
-0.1
-0.1
complex community
Community=guar; Passage=4
-0.4
-0.2
+0.3
+0.1
+0.1
complex community
Community=Locust bean gum; Passage=4
-0.2
-0.2
+0.1
+0.3
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.1
+0.0
-0.2
+0.1
+0.2
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.2
-0.1
+0.1
+0.2
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.1
+0.2
-0.2
+0.2
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.1
+0.2
+0.1
+0.2
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.2
+0.2
+0.0
+0.1
+0.2
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.1
+0.3
+0.0
+0.2
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.2
+0.4
+0.0
+0.0
+0.2
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