Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_00510	PS417_00515	PS417_00520	PS417_00525	PS417_00530
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-3.4	-1.5	-0.3	-0.2	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-3.2	-0.0	+0.0	-0.5	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-3.6	-0.0	-0.3	+0.3	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-3.3	-0.2	+0.1	+0.0	N.D.
soil	soil sample 4; outgrowth in LB	-3.0	-0.4	+0.3	+0.0	N.D.
phage	P. simiae OR Antrim MOI 1	-3.0	+0.3	+0.0	-0.4	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-2.3	-0.1	-0.3	-0.1	N.D.
nitrogen source	Adenine (N)	-2.6	-0.1	+0.1	-0.1	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-2.7	-0.3	+0.1	+0.3	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.6	+0.3	-0.4	+0.1	N.D.
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.9	-0.5	-0.1	+0.1	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-2.2	-0.1	+0.0	+0.1	N.D.
solid stress	Fraxetin 0.5 mM; solid stress	-2.3	-0.0	+0.2	-0.0	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-2.3	+0.0	+0.0	+0.1	N.D.
stress	Benzalkonium Chloride 0.012 mg/ml	+0.2	-0.2	+0.1	-2.0	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.6	-0.5	+0.5	-0.4	N.D.
seeds	Growth on radish seeds for 72 hours	-1.6	-0.4	+0.1	-0.0	N.D.
liquid stress	Fraxetin 2 mM; liquid stress	-2.0	+0.1	+0.2	-0.0	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-1.6	-0.2	-0.1	+0.2	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-2.0	-0.0	+0.3	+0.1	N.D.
liquid stress	Scopoletin 3 mM; liquid stress	-1.8	+0.3	-0.1	+0.1	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.8	+0.3	+0.1	+0.1	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.3	-0.4	-0.6	+0.3	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.4	-0.5	-0.0	+0.2	N.D.
soil	soil sample 8; outgrowth in LB	+1.6	-0.5	+0.2	-0.0	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.5	+0.4	-0.1	-0.6	N.D.
stress	methylglyoxal 0.032 vol%	+1.8	-0.7	+0.5	-0.3	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Cysteine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+1.8	-0.1	+0.1	-0.3	N.D.
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+1.5	+0.9	+0.1	+0.0	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+2.3	+0.2	+0.6	-0.0	N.D.