Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_05195 and PS417_05200 are separated by 154 nucleotidesPS417_05200 and PS417_05205 are separated by 51 nucleotidesPS417_05205 and PS417_05210 are separated by 277 nucleotidesPS417_05210 and PS417_05215 overlap by 1 nucleotides PS417_05195: PS417_05195 - GTPase Era, at 1,153,280 to 1,154,182 _05195 PS417_05200: PS417_05200 - DNA recombination protein RecO, at 1,154,337 to 1,155,026 _05200 PS417_05205: PS417_05205 - pyridoxine 5'-phosphate synthase, at 1,155,078 to 1,155,821 _05205 PS417_05210: PS417_05210 - copper oxidase, at 1,156,099 to 1,157,475 _05210 PS417_05215: PS417_05215 - zinc-binding protein, at 1,157,475 to 1,157,972 _05215
Group Condition PS417_05195 PS417_05200 PS417_05205 PS417_05210 PS417_05215
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. -0.5 N.D. -3.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.9 N.D. -1.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.3 N.D. -1.5 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x N.D. -0.6 N.D. -2.1 N.D.
liquid stress Fraxetin 3 mM; liquid stress N.D. -0.7 N.D. -1.7 N.D.
liquid stress Fraxetin 3 mM; liquid stress N.D. -0.1 N.D. -2.2 N.D.
stress Cisplatin 0.01 mg/ml N.D. -2.5 N.D. +0.3 N.D.
liquid stress Fraxetin 3 mM; liquid stress N.D. -0.3 N.D. -1.7 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.8 N.D. -1.2 N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. -1.8 N.D. -0.2 N.D.
solid stress Fraxetin 3 mM; solid stress N.D. -0.1 N.D. -1.8 N.D.
solid stress Fraxetin 3 mM; solid stress N.D. -0.5 N.D. -1.3 N.D.
solid stress Fraxetin 3 mM; solid stress N.D. -0.4 N.D. -1.3 N.D.
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x N.D. -0.3 N.D. -1.4 N.D.
solid stress Fraxetin 2 mM; solid stress N.D. -0.2 N.D. -1.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -1.1 N.D. -0.6 N.D.
liquid stress Fraxetin 3 mM; liquid stress N.D. -0.3 N.D. -1.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.0 N.D. -0.6 N.D.
soil soil sample 4; outgrowth in LB N.D. -1.1 N.D. -0.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.2 N.D. -0.3 N.D.
solid stress Fraxetin 2 mM; solid stress N.D. -0.3 N.D. -1.2 N.D.
solid stress Fraxetin 0.5 mM; solid stress N.D. -1.1 N.D. -0.4 N.D.
rhizosphere rhizosphere sample 8; outgrowth in LB N.D. -1.3 N.D. -0.2 N.D.
soil soil sample 7; outgrowth in LB N.D. -1.1 N.D. -0.4 N.D.
solid stress Fraxetin 2 mM; solid stress N.D. -0.3 N.D. -1.2 N.D.
soil soil sample 6; outgrowth in LB N.D. -1.0 N.D. -0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. -0.9 N.D. -0.6 N.D.
soil soil sample 3; outgrowth in LB N.D. -1.5 N.D. +0.0 N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -1.3 N.D. +0.3 N.D.
motility inner cut, LB soft agar motility assay N.D. +1.0 N.D. -0.7 N.D.
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