Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_05120	PS417_05125	PS417_05130	PS417_05135	PS417_05140
liquid stress	Fraxetin 2 mM; liquid stress	-2.2	-0.5	-0.4	-0.1	-0.4
phage	P. simiae OR Antrim MOI 10	+0.1	-0.6	-0.1	-1.3	-1.2
stress	Gentamicin 0.008 mg/ml	-1.2	+0.6	+0.1	-0.5	-2.0
nitrogen source	Urea (N)	-0.3	+0.5	+0.1	-0.6	-2.4
phage	JP1 MOI 1	-3.4	-0.3	+0.8	-0.4	+0.9
stress	Doxycycline hyclate 0.001 mg/ml	+0.7	+0.1	+0.5	+0.1	-3.3
carbon source	2'-Deoxyinosine 5 mM (C)	-1.2	-0.4	+0.4	-0.1	-0.7
carbon source	2'-Deoxyinosine 5 mM (C)	-0.9	+0.6	-0.9	+0.1	-0.4
nitrogen source	Inosine (N)	+0.5	+0.3	-0.5	-0.3	-1.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.8	-0.1	-0.7	+0.3	-1.7
phage	P. simiae Grant Run MOI 0.1	+0.1	-0.5	+0.8	-0.9	-0.7
phage	P. simiae Grant Run MOI 0.1	+1.3	-0.4	-0.2	-0.8	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.3	-0.8	+0.1	-0.4	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.2	-0.7	-0.5	-0.1	+1.1
phage	Wcs_0.1	+0.8	+0.6	-0.6	+0.1	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.0	-0.2	-0.0	+0.1	+1.4
supernatant control	Vogels_fungal_media 0.1X	+1.0	+0.5	-1.3	-0.1	+0.3
carbon source	L-Valine (C)	-0.3	+0.2	-0.2	-0.4	+1.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	-1.0	+0.3	+0.2	+0.6
carbon source	L-Valine (C)	+0.5	-1.1	+0.7	+0.2	+1.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	+0.6	-0.1	-0.1	+1.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	+1.3	-0.6	+0.1	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.7	-0.4	+0.3	+0.3	+1.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	+0.4	+0.2	-0.2	+1.8
root	root sample 6; outgrowth in LB	+1.7	-0.2	+0.5	-0.1	+0.5
stress	methylglyoxal 0.032 vol%	-1.4	+0.8	+0.3	+0.1	+2.7
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	+0.2	+1.0	+0.2	+0.7
seeds	Growth on radish seeds for 72 hours	+0.4	+0.5	+0.6	+0.1	+1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.7	+0.5	+0.3	+0.2	+1.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+1.7	+1.9	-0.1	-0.2	+0.3