Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_00500	PS417_00505	PS417_00510	PS417_00515	PS417_00520
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.2	-0.4	-3.4	-1.5	-0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.2	-0.9	-3.3	-0.2	+0.1
soil	soil sample 4; outgrowth in LB	-0.2	-0.7	-3.0	-0.4	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.6	-3.6	-0.0	-0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.5	-0.1	-2.3	-0.1	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.2	-3.2	-0.0	+0.0
nitrogen source	Adenine (N)	+0.2	-0.4	-2.6	-0.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-0.5	-2.3	+0.0	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.1	+0.2	-2.7	-0.3	+0.1
phage	P. simiae OR Antrim MOI 1	+0.2	-0.0	-3.0	+0.3	+0.0
solid stress	Fraxetin 0.5 mM; solid stress	-0.0	-0.1	-2.3	-0.0	+0.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.4	-0.2	-1.9	-0.5	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.3	-0.2	-1.6	-0.5	+0.5
liquid stress	Fraxetin 2 mM; liquid stress	+0.0	-0.1	-2.0	+0.1	+0.2
liquid stress	Scopoletin 3 mM; liquid stress	-0.2	-0.0	-1.8	+0.3	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	+0.8	-2.6	+0.3	-0.4
seeds	Growth on radish seeds for 72 hours	-0.1	+0.2	-1.6	-0.4	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.4	-1.8	+0.3	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.8	-2.2	-0.1	+0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	+0.5	-2.0	-0.0	+0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.5	-1.0	-0.8	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.4	-1.7	+0.2	+0.1
phage	P. simiae Grant Run MOI 10	-0.2	-0.7	+1.1	+0.2	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.3	+1.3	-0.4	-0.6
soil	soil sample 8; outgrowth in LB	-0.1	+0.1	+1.6	-0.5	+0.2
stress	methylglyoxal 0.032 vol%	-0.1	-0.3	+1.8	-0.7	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Cysteine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.0	-0.5	+1.8	-0.1	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	+0.7	+1.4	-0.5	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.2	+2.3	+0.2	+0.6
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-0.0	+0.2	+1.5	+0.9	+0.1