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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF99 and GFF100 overlap by 4 nucleotides
GFF100 and GFF101 are separated by 335 nucleotides
GFF101 and GFF102 are separated by 184 nucleotides
GFF102 and GFF103 are separated by 17 nucleotides
GFF99 - KEGG: RNA polymerase sigma-70 factor, ECF subfamily, at 124,849 to 125,409
GFF99
GFF100 - no description, at 125,406 to 126,104
GFF100
GFF101 - Phosphate-binding DING protein (related to PstS), at 126,440 to 127,729
GFF101
GFF102 - General secretion pathway protein F, at 127,914 to 129,119
GFF102
GFF103 - General secretion pathway protein E, at 129,137 to 130,489
GFF103
Group
Condition
GFF99
GFF100
GFF101
GFF102
GFF103
complex community
Community=arabino-guar; Passage=4
-3.1
+0.4
-0.3
-0.0
-0.9
complex community
Community=Locust bean gum; Passage=4
-2.8
-0.0
-1.0
+0.3
-0.1
complex community
Community=Locust bean gum; Passage=4
-0.8
+0.4
-0.7
-0.0
-0.9
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.3
-0.7
+0.0
-0.1
-0.7
vitamin
M9 with Supernatant from Cyptococcus
-1.0
-0.0
-0.1
-0.2
-0.2
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.1
-0.1
-0.1
-0.5
-0.6
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.3
-0.4
+0.0
-0.8
+0.3
complex community
Community=Kojac gum; Passage=1
+0.1
+0.2
-0.2
-0.1
-1.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.8
+0.1
+0.0
-0.1
-0.2
complex community
Community=Locust bean gum; Passage=4
+0.6
-0.5
-0.1
-0.7
-0.2
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.5
+0.0
+0.1
+0.2
-0.7
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.3
+0.2
-0.1
-0.5
-0.7
phage
phage_bap4
+0.2
+0.3
-0.2
+0.1
-1.1
phage
phage_bap4
-0.0
+0.2
+0.3
-0.9
-0.2
complex community
Community=arabino-guar; Passage=4
+0.7
-0.2
-0.3
-1.6
+0.9
complex community
Community=arabino-guar; Passage=4
+0.3
-0.5
+0.3
-0.2
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.3
+0.2
+0.1
-0.5
-0.5
phage
phage_bap4
-0.5
+0.2
-0.0
-0.3
+0.2
complex community
Community=arabino-guar; Passage=4
+0.2
-0.5
+0.3
-0.4
+0.1
complex community
Community=Locust bean gum; Passage=4
-0.3
-0.0
-0.3
-0.0
+0.8
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.3
-0.0
+0.0
-0.6
+0.4
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.2
-0.1
-0.0
-0.4
+0.7
phage
phage_bap4
+0.7
-0.2
-0.1
-0.2
+0.3
no phage control
no phage control
-0.2
+0.2
-0.0
-0.1
+0.6
complex community
Community=guar; Passage=4
+0.8
+0.2
-0.1
-0.3
-0.0
complex community
Community=guar; Passage=4
+0.6
-0.1
-0.3
+0.3
+0.6
complex community
Community=Kojac gum; Passage=4
+1.3
-0.3
-0.3
+0.6
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.4
+0.2
+0.0
-0.2
+1.0
complex community
Community=guar; Passage=4
+0.5
-0.5
+0.1
+0.6
+0.8
complex community
Community=guar; Passage=4
+1.2
+0.5
+0.2
+0.2
+1.3
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