Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_05100	PS417_05105	PS417_05110	PS417_05115	PS417_05120
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-4.3	+0.2	-0.1	N.D.	-0.4
seeds	Growth on radish seeds for 24 hours	-3.0	+0.1	-0.3	N.D.	-0.6
soil	soil sample 5; outgrowth in LB	-4.1	-0.1	-0.1	N.D.	+0.7
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.7	-1.8	-1.7	N.D.	+0.8
seeds	Growth on radish seeds for 72 hours	-1.7	-0.1	-0.3	N.D.	-0.9
liquid stress	Fraxetin 2 mM; liquid stress	-0.2	-0.6	-0.1	N.D.	-2.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.4	-0.9	-0.3	N.D.	-1.1
phage	JP1 MOI 1	-0.4	+1.2	+0.1	N.D.	-3.4
seeds	Growth on radish seeds for 72 hours	-1.1	+0.0	-0.3	N.D.	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.0	-0.2	+0.0	N.D.	-1.2
carbon source	Trisodium citrate (C)	-2.5	+0.1	+0.1	N.D.	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.9	-0.5	-0.3	N.D.	+0.6
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.3	-1.0	+0.3	N.D.	-0.0
carbon source	Trisodium citrate (C)	-2.4	+0.7	+0.2	N.D.	-0.5
rhizosphere	rhizosphere sample 2; outgrowth in LB	-2.1	-0.4	+0.1	N.D.	+1.0
phage moi 100	Time6-phageFRS	+0.8	-0.3	-0.3	N.D.	-1.2
stress	Polymyxin B sulfate 0.006 mg/ml	-2.1	+0.4	+0.1	N.D.	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	-0.9	+0.0	N.D.	+0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.6	+0.6	-0.2	N.D.	+0.7
carbon source	2'-Deoxyinosine 5 mM (C)	+1.2	-0.4	+0.0	N.D.	-1.2
supernatant control	Vogels_fungal_media 0.1X	-1.0	+0.2	-0.5	N.D.	+1.0
stress	methylglyoxal 0.032 vol%	+1.2	+0.1	-0.1	N.D.	-1.4
solid stress	Fraxetin 3 mM; solid stress	+1.6	-1.1	-0.4	N.D.	-0.2
root	root sample 6; outgrowth in LB	-0.9	-1.0	+0.2	N.D.	+1.7
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.5	+0.8	+0.0	N.D.	+0.7
carbon source	2-Deoxy-D-Ribose 10 mM (C)	+1.4	-0.8	-0.2	N.D.	-0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.8	+0.4	-0.4	N.D.	+1.1
phage	P. simiae Grant Run MOI 10	+0.7	+0.9	+0.1	N.D.	-1.1
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.8	+0.6	+0.7	N.D.	-0.6
phage	P. simiae Grant Run MOI 0.1	+1.6	+0.4	+0.1	N.D.	+1.3