Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_00040 and PS417_00045 are separated by 182 nucleotidesPS417_00045 and PS417_00050 are separated by 82 nucleotidesPS417_00050 and PS417_00055 are separated by 5 nucleotidesPS417_00055 and PS417_00060 overlap by 4 nucleotides PS417_00040: PS417_00040 - ATPase, at 8,436 to 10,715 _00040 PS417_00045: PS417_00045 - glycerol acyltransferase, at 10,898 to 11,668 _00045 PS417_00050: PS417_00050 - histidinol phosphatase, at 11,751 to 12,284 _00050 PS417_00055: PS417_00055 - glycine-tRNA synthetase subunit beta, at 12,290 to 14,344 _00055 PS417_00060: PS417_00060 - glycyl-tRNA synthetase, at 14,341 to 15,294 _00060
Group Condition PS417_00040 PS417_00045 PS417_00050 PS417_00055 PS417_00060
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -6.4 N.D. N.D. N.D.
solid stress Fraxetin 2 mM; solid stress -0.0 -6.5 N.D. N.D. N.D.
solid stress Fraxetin 3 mM; solid stress +0.2 -6.6 N.D. N.D. N.D.
solid stress Fraxetin 2 mM; solid stress +0.2 -6.5 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 -6.4 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -5.4 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 -5.1 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -4.9 N.D. N.D. N.D.
solid stress Fraxetin 3 mM; solid stress -0.0 -4.5 N.D. N.D. N.D.
solid stress Fraxetin 2 mM; solid stress +0.1 -4.6 N.D. N.D. N.D.
stress TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2 -0.2 -4.2 N.D. N.D. N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 -4.3 N.D. N.D. N.D.
solid stress Fraxetin 3 mM; solid stress +0.1 -3.8 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.0 -3.6 N.D. N.D. N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB -0.1 -3.3 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -3.5 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -3.4 N.D. N.D. N.D.
stress TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1 +0.0 -3.4 N.D. N.D. N.D.
solid stress Fraxetin 2 mM; solid stress +0.1 -3.4 N.D. N.D. N.D.
soil soil sample 3; outgrowth in LB -0.2 -3.0 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.1 -2.9 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -2.5 N.D. N.D. N.D.
stress TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2 -0.0 -2.9 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.0 -2.9 N.D. N.D. N.D.
solid stress Fraxetin 2 mM; solid stress +0.3 -3.1 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.4 -3.0 N.D. N.D. N.D.
liquid stress Fraxetin 3 mM; liquid stress +0.9 -2.1 N.D. N.D. N.D.
liquid stress Fraxetin 3 mM; liquid stress +1.3 -2.1 N.D. N.D. N.D.
liquid stress Fraxetin 3 mM; liquid stress +1.3 -2.1 N.D. N.D. N.D.
stress Neomycin 0.04 mg/ml +0.2 +4.3 N.D. N.D. N.D.
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