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Fitness for 5 genes in
Enterobacter asburiae PDN3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
EX28DRAFT_3844 and EX28DRAFT_3845 overlap by 4 nucleotides
EX28DRAFT_3845 and EX28DRAFT_3846 are separated by 103 nucleotides
EX28DRAFT_3846 and EX28DRAFT_3847 are separated by 90 nucleotides
EX28DRAFT_3847 and EX28DRAFT_3848 are separated by 2 nucleotides
EX28DRAFT_3844: EX28DRAFT_3844 - selenocysteine-specific elongation factor SelB, at 51,897 to 53,744
_3844
EX28DRAFT_3845: EX28DRAFT_3845 - L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1), at 53,741 to 55,126
_3845
EX28DRAFT_3846: EX28DRAFT_3846 - Glutathione S-transferase, at 55,230 to 55,838
_3846
EX28DRAFT_3847: EX28DRAFT_3847 - Multidrug resistance efflux pump, at 55,929 to 57,065
_3847
EX28DRAFT_3848: EX28DRAFT_3848 - Protein of unknown function (DUF3302), at 57,068 to 57,424
_3848
Group
Condition
EX28DRAFT
_3844
EX28DRAFT
_3845
EX28DRAFT
_3846
EX28DRAFT
_3847
EX28DRAFT
_3848
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
-0.3
-0.5
-0.2
-0.3
-0.2
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
-0.1
-0.3
-0.3
-0.3
-0.2
stress
MS_media with arsenate 5 mM
-0.4
-0.4
-0.1
-0.1
-0.2
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
-0.4
-0.0
-0.3
+0.0
-0.3
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
-0.2
-0.0
-0.1
-0.1
-0.4
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
-0.1
-0.2
-0.2
-0.2
+0.0
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.3
-0.0
-0.4
-0.5
-0.1
stress
MS_media with arsenate 5 mM
-0.2
-0.1
-0.0
-0.2
-0.2
stress
M9 with casaminos and trichloroethylene 76.3 uM
-0.0
-0.2
-0.2
-0.2
-0.0
stress
MS_media with arsenate 5 mM
-0.2
-0.2
-0.0
-0.1
-0.1
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
-0.4
-0.0
-0.1
+0.0
+0.1
no stress control
MS_media no stress control
-0.2
-0.2
-0.2
+0.1
+0.1
stress
MS_media with arsenate 5 mM
-0.2
-0.1
+0.1
-0.0
-0.2
stress
MS_media with arsenate 5 mM
-0.3
-0.3
+0.1
-0.1
+0.2
stress
M9 with casaminos and trichloroethylene 76.3 uM
-0.1
-0.1
-0.2
-0.1
+0.1
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.1
+0.0
-0.1
-0.4
+0.1
stress
MS_media with arsenate 5 mM
-0.1
-0.4
+0.1
+0.0
+0.0
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
-0.2
+0.0
+0.0
-0.2
+0.1
stress
MS_media with m-arsenite 1 mM
+0.2
-0.3
+0.0
+0.0
-0.1
stress
MS_media with m-arsenite 1 mM
+0.2
-0.1
+0.1
-0.1
-0.3
stress
M9 with casaminos and trichloroethylene 76.3 uM
-0.1
-0.3
+0.1
+0.0
+0.3
stress
M9 with sucrose and trichloroethylene 76.3 uM
-0.2
-0.1
+0.0
-0.0
+0.3
stress
MS_media with m-arsenite 1 mM
+0.3
-0.0
+0.0
+0.1
-0.3
stress
MS_media with m-arsenite 1 mM
+0.2
-0.1
-0.2
+0.0
+0.1
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.2
+0.5
-0.2
-0.4
+0.2
stress
M9 with sucrose and trichloroethylene 76.3 uM
+0.2
-0.2
+0.3
-0.3
+0.3
stress
M9 with sucrose and trichloroethylene 76.3 uM
+0.2
-0.1
+0.3
+0.0
+0.2
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.4
+0.0
+0.4
-0.2
-0.1
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.4
+0.6
+0.5
-0.1
-0.3
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.4
-0.1
+0.4
-0.1
+0.8
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