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Cofit
Fitness for 5 genes in
Enterobacter asburiae PDN3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
EX28DRAFT_2882 and EX28DRAFT_2883 are separated by 39 nucleotides
EX28DRAFT_2883 and EX28DRAFT_2884 are separated by 128 nucleotides
EX28DRAFT_2884 and EX28DRAFT_2885 are separated by 13 nucleotides
EX28DRAFT_2885 and EX28DRAFT_2886 are separated by 192 nucleotides
EX28DRAFT_2882: EX28DRAFT_2882 - Uncharacterized small membrane protein, at 189,351 to 189,746
_2882
EX28DRAFT_2883: EX28DRAFT_2883 - Transcriptional regulator, at 189,786 to 190,703
_2883
EX28DRAFT_2884: EX28DRAFT_2884 - RNA, at 190,832 to 191,039
_2884
EX28DRAFT_2885: EX28DRAFT_2885 - Bacterial protein of unknown function (DUF903), at 191,053 to 191,280
_2885
EX28DRAFT_2886: EX28DRAFT_2886 - cysteine desulfurase, catalytic subunit CsdA, at 191,473 to 192,678
_2886
Group
Condition
EX28DRAFT
_2882
EX28DRAFT
_2883
EX28DRAFT
_2884
EX28DRAFT
_2885
EX28DRAFT
_2886
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
+0.4
-0.4
-1.3
-0.3
+0.0
stress
M9 with casaminos and trichloroethylene 76.3 uM
-0.0
-0.6
-0.5
-0.2
-0.2
stress
M9 with casaminos and trichloroethylene 76.3 uM
+0.0
-0.3
-0.1
-0.8
-0.2
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
-0.0
-0.0
-0.9
-0.3
+0.2
stress
M9 with casaminos and trichloroethylene 76.3 uM
-0.2
-0.6
+0.4
-0.4
-0.2
stress
MS_media with arsenate 5 mM
+0.1
-0.0
-0.6
-0.3
-0.2
stress
M9 with casaminos and trichloroethylene 76.3 uM
+0.1
-0.2
-0.1
-0.4
-0.4
stress
M9 with casaminos and trichloroethylene 76.3 uM
+0.0
-0.3
+0.1
-0.3
-0.6
stress
M9 with casaminos and trichloroethylene 76.3 uM
+0.1
-0.6
+0.1
-0.4
-0.2
stress
MS_media with m-arsenite 1 mM
+0.1
+0.1
-0.9
-0.3
+0.1
no stress control
M9 with sucrose; no stress control
-0.1
+0.1
+0.2
-0.6
-0.3
stress
MS_media with m-arsenite 1 mM
+0.1
-0.3
-0.5
-0.1
+0.1
no stress control
M9 with sucrose; no stress control
-0.0
+0.2
+0.1
-0.6
-0.2
stress
MS_media with m-arsenite 1 mM
+0.3
+0.2
-1.0
+0.3
-0.2
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
+0.0
+0.2
-0.6
-0.3
+0.2
stress
M9 with sucrose and trichloroethylene 76.3 uM
-0.1
-0.1
+0.7
-0.6
-0.2
no stress control
M9 with sucrose; no stress control
-0.1
+0.3
+0.3
-0.4
-0.3
stress
M9 with sucrose and trichloroethylene 76.3 uM
-0.0
+0.0
+0.5
-0.6
+0.1
stress
M9 with sucrose and trichloroethylene 76.3 uM
+0.1
+0.4
+0.3
-0.5
-0.2
stress
M9 with sucrose and trichloroethylene 76.3 uM
+0.0
+0.2
+0.6
-0.6
-0.1
stress
MS_media with m-arsenite 1 mM
+0.3
-0.0
-0.3
+0.5
-0.1
no stress control
M9 with sucrose; no stress control
+0.2
+0.4
+0.4
-0.7
+0.0
no stress control
M9 with sucrose; no stress control
+0.2
+0.6
+0.5
-0.3
-0.6
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
-0.1
+0.8
+0.7
-0.8
-0.1
no stress control
M9 with sucrose; no stress control
+0.1
+0.4
+0.5
-0.4
+0.0
no stress control
M9 with sucrose; no stress control
-0.1
+0.5
+0.5
-0.2
-0.1
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
-0.2
+0.4
+0.9
+0.0
-0.4
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.8
+0.6
-0.5
+0.2
+0.2
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.0
+0.7
+1.1
-0.6
+0.3
stress
M9 with sucrose and trichloroethylene 76.3 uM
+0.3
+0.2
+1.1
-0.1
+0.2
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