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Fitness for 5 genes in
Enterobacter asburiae PDN3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
EX28DRAFT_2606 and EX28DRAFT_2607 are separated by 241 nucleotides
EX28DRAFT_2607 and EX28DRAFT_2608 overlap by 14 nucleotides
EX28DRAFT_2608 and EX28DRAFT_2609 are separated by 363 nucleotides
EX28DRAFT_2609 and EX28DRAFT_2610 are separated by 120 nucleotides
EX28DRAFT_2606: EX28DRAFT_2606 - taurine ABC transporter, periplasmic binding protein, at 2,642,229 to 2,643,191
_2606
EX28DRAFT_2607: EX28DRAFT_2607 - Homocysteine/selenocysteine methylase (S-methylmethionine-dependent), at 2,643,433 to 2,644,365
_2607
EX28DRAFT_2608: EX28DRAFT_2608 - Amino acid transporters, at 2,644,352 to 2,645,752
_2608
EX28DRAFT_2609: EX28DRAFT_2609 - Predicted permease, at 2,646,116 to 2,647,225
_2609
EX28DRAFT_2610: EX28DRAFT_2610 - diguanylate cyclase (GGDEF) domain, at 2,647,346 to 2,649,130
_2610
Group
Condition
EX28DRAFT
_2606
EX28DRAFT
_2607
EX28DRAFT
_2608
EX28DRAFT
_2609
EX28DRAFT
_2610
stress
MS_media with m-arsenite 1 mM
-0.1
-0.3
-0.4
-0.0
-0.0
stress
MS_media with arsenate 5 mM
-0.2
+0.0
-0.2
-0.4
+0.2
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
-0.6
-0.0
-0.1
+0.4
-0.0
stress
M9 with casaminos and trichloroethylene 76.3 uM
+0.1
-0.3
+0.3
-0.3
-0.1
stress
MS_media with arsenate 5 mM
-0.5
-0.1
+0.4
-0.1
-0.0
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.3
+0.4
-1.0
-0.3
+0.4
stress
MS_media with arsenate 5 mM
-0.1
+0.1
+0.3
-0.4
-0.1
no stress control
M9 with sucrose; no stress control
-0.2
+0.4
-0.2
+0.1
-0.2
stress
MS_media with m-arsenite 1 mM
-0.2
-0.1
+0.2
-0.2
+0.2
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.2
+0.3
-0.6
+0.2
-0.2
stress
M9 with sucrose and trichloroethylene 76.3 uM
+0.1
+0.3
-0.0
-0.0
-0.4
stress
MS_media with m-arsenite 1 mM
-0.1
-0.1
+0.3
-0.2
+0.2
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
-0.1
+0.1
-0.1
+0.3
-0.2
stress
MS_media with arsenate 5 mM
+0.1
+0.0
+0.3
-0.2
-0.1
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
+0.1
+0.5
-1.1
+0.3
+0.4
stress
M9 with sucrose and trichloroethylene 76.3 uM
+0.2
-0.1
+0.2
+0.2
-0.3
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.5
-0.1
-0.2
+0.2
+0.1
no stress control
M9 with sucrose; no stress control
+0.0
+0.4
-0.1
+0.4
-0.1
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.2
+0.3
-0.6
+0.2
+0.3
stress
M9 with casaminos and trichloroethylene 76.3 uM
+0.4
+0.2
+0.0
-0.1
+0.1
stress
M9 with casaminos and trichloroethylene 76.3 uM
+0.6
+0.1
-0.0
-0.0
-0.1
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.4
+0.1
-0.1
+0.1
+0.1
stress
M9 with sucrose and trichloroethylene 76.3 uM
+0.3
+0.2
+0.2
-0.0
+0.0
stress
M9 with casaminos and trichloroethylene 76.3 uM
+0.2
+0.1
+0.3
+0.3
-0.2
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.2
+0.2
+0.0
+0.0
+0.2
stress
M9 with sucrose and trichloroethylene 76.3 uM
+0.2
+0.3
+0.3
-0.0
-0.0
stress
M9 with sucrose and trichloroethylene 76.3 uM
+0.3
+0.2
+0.3
+0.3
-0.2
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.7
+0.0
-0.5
+0.4
+0.5
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
+0.4
+0.3
+0.3
-0.1
+0.4
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.4
+0.5
+0.0
+0.4
+0.2
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