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Fitness for 5 genes in
Enterobacter asburiae PDN3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
EX28DRAFT_2493 and EX28DRAFT_2494 are separated by 113 nucleotides
EX28DRAFT_2494 and EX28DRAFT_2495 are separated by 141 nucleotides
EX28DRAFT_2495 and EX28DRAFT_2496 are separated by 22 nucleotides
EX28DRAFT_2496 and EX28DRAFT_2497 are separated by 510 nucleotides
EX28DRAFT_2493: EX28DRAFT_2493 - Small-conductance mechanosensitive channel, at 2,521,472 to 2,524,819
_2493
EX28DRAFT_2494: EX28DRAFT_2494 - transcriptional regulator, TetR family, at 2,524,933 to 2,525,586
_2494
EX28DRAFT_2495: EX28DRAFT_2495 - RND family efflux transporter, MFP subunit, at 2,525,728 to 2,526,921
_2495
EX28DRAFT_2496: EX28DRAFT_2496 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 2,526,944 to 2,530,090
_2496
EX28DRAFT_2497: EX28DRAFT_2497 - Biofilm formation regulator YbaJ, at 2,530,601 to 2,530,975
_2497
Group
Condition
EX28DRAFT
_2493
EX28DRAFT
_2494
EX28DRAFT
_2495
EX28DRAFT
_2496
EX28DRAFT
_2497
stress
MS_media with arsenate 5 mM
+0.1
-0.0
-0.3
-0.3
-1.8
stress
MS_media with arsenate 5 mM
-0.0
-0.0
-0.5
-0.2
-1.3
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.0
-0.1
-0.5
-0.4
-0.9
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.3
-0.1
-1.0
-1.4
+0.3
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.0
-0.3
-0.5
-0.5
-0.3
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.5
-0.3
-0.5
-1.0
-0.3
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.3
+0.1
-0.7
-0.7
-0.7
stress
MS_media with arsenate 5 mM
+0.0
+0.3
-0.4
-0.3
-1.3
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.2
-0.3
-0.6
-0.5
-0.4
stress
MS_media with arsenate 5 mM
+0.0
+0.1
-0.4
-0.2
-1.1
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.3
-0.0
-0.8
-1.1
+0.1
stress
MS_media with arsenate 5 mM
+0.1
+0.1
-0.3
-0.3
-1.0
stress
M9 with sucrose and trichloroethylene 76.3 uM
-0.2
-0.0
-0.1
-0.2
-0.7
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.1
-0.1
-0.5
-0.6
+0.0
stress
MS_media with m-arsenite 1 mM
+0.1
+0.0
-0.1
-0.3
-0.8
stress
MS_media with arsenate 5 mM
+0.2
+0.2
-0.2
-0.3
-0.8
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.3
-0.1
-0.4
-0.9
+0.4
no stress control
M9 with sucrose; no stress control
+0.1
-0.0
-0.2
+0.2
-0.8
no stress control
M9 with sucrose; no stress control
-0.1
-0.1
-0.0
+0.2
-0.7
no stress control
M9 with sucrose; no stress control
+0.0
-0.1
-0.1
+0.1
-0.6
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
+0.2
-0.3
-0.2
-0.3
+0.6
stress
M9 with casaminos and trichloroethylene 76.3 uM
+0.1
-0.3
+0.2
+0.3
-0.4
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
+0.3
-0.3
-0.2
-0.1
+0.3
stress
M9 with casaminos and trichloroethylene 76.3 uM
-0.2
-0.2
+0.3
+0.5
-0.3
stress
M9 with casaminos and trichloroethylene 76.3 uM
-0.1
-0.2
+0.5
+0.5
-0.6
stress
M9 with casaminos and trichloroethylene 76.3 uM
+0.0
-0.2
+0.4
+0.4
-0.3
stress
M9 with casaminos and trichloroethylene 76.3 uM
-0.1
-0.3
+0.4
+0.6
-0.5
stress
M9 with casaminos and trichloroethylene 76.3 uM
+0.0
-0.4
+0.3
+0.4
+0.0
stress
M9 with casaminos and trichloroethylene 76.3 uM
+0.0
-0.1
+0.3
+0.5
-0.2
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
+0.2
-0.1
+0.0
-0.2
+0.8
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