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Fitness for 5 genes in
Enterobacter asburiae PDN3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
EX28DRAFT_2219 and EX28DRAFT_2220 overlap by 1 nucleotides
EX28DRAFT_2220 and EX28DRAFT_2221 are separated by 127 nucleotides
EX28DRAFT_2221 and EX28DRAFT_2222 are separated by 19 nucleotides
EX28DRAFT_2222 and EX28DRAFT_2223 overlap by 4 nucleotides
EX28DRAFT_2219: EX28DRAFT_2219 - histidine ammonia-lyase (EC 4.3.1.3), at 2,242,204 to 2,243,724
_2219
EX28DRAFT_2220: EX28DRAFT_2220 - urocanate hydratase (EC 4.2.1.49), at 2,243,724 to 2,245,409
_2220
EX28DRAFT_2221: EX28DRAFT_2221 - histidine utilization repressor, proteobacterial, at 2,245,537 to 2,246,271
_2221
EX28DRAFT_2222: EX28DRAFT_2222 - formiminoglutamase (EC 3.5.3.8), at 2,246,291 to 2,247,229
_2222
EX28DRAFT_2223: EX28DRAFT_2223 - imidazolonepropionase (EC 3.5.2.7), at 2,247,226 to 2,248,449
_2223
Group
Condition
EX28DRAFT
_2219
EX28DRAFT
_2220
EX28DRAFT
_2221
EX28DRAFT
_2222
EX28DRAFT
_2223
stress
M9 with casaminos and trichloroethylene 76.3 uM
+0.1
-0.1
-0.1
-1.1
-0.4
stress
M9 with casaminos and trichloroethylene 76.3 uM
-0.0
+0.2
-0.3
-1.0
-0.3
stress
M9 with casaminos and trichloroethylene 76.3 uM
+0.3
+0.0
-0.1
-1.0
-0.4
stress
M9 with casaminos and trichloroethylene 76.3 uM
+0.1
+0.0
-0.0
-0.9
-0.3
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.1
-0.2
-0.5
-0.3
+0.0
stress
M9 with casaminos and trichloroethylene 76.3 uM
+0.1
+0.1
-0.0
-0.8
-0.2
stress
M9 with casaminos and trichloroethylene 76.3 uM
+0.2
-0.1
-0.0
-0.7
-0.1
stress
MS_media with m-arsenite 1 mM
-0.3
+0.1
-0.2
-0.3
-0.1
stress
M9 with casaminos and trichloroethylene 76.3 uM
+0.3
-0.1
+0.4
-0.7
-0.2
stress
M9 with sucrose and trichloroethylene 76.3 uM
+0.1
+0.1
-0.6
-0.1
+0.2
stress
M9 with sucrose and trichloroethylene 76.3 uM
+0.2
-0.0
-0.4
-0.2
+0.1
stress
M9 with sucrose and trichloroethylene 76.3 uM
+0.1
-0.0
-0.6
-0.1
+0.3
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
-0.2
+0.1
-0.6
+0.3
+0.1
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.3
+0.0
-0.7
-0.1
+0.3
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
-0.3
+0.5
+0.2
-0.1
-0.3
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
+0.2
+0.1
-0.3
-0.1
+0.2
no stress control
M9 with sucrose; no stress control
-0.3
-0.1
+0.4
-0.1
+0.3
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.4
+0.1
-0.3
-0.4
+0.3
no stress control
MS_media no stress control
-0.1
+0.0
+0.5
-0.0
-0.2
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.3
+0.1
+0.2
-0.1
-0.3
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.3
+0.1
-0.4
-0.0
+0.1
stress
MS_media with m-arsenite 1 mM
-0.1
+0.0
+0.4
+0.3
-0.3
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.3
+0.1
-0.2
-0.1
+0.1
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.2
-0.3
-0.4
+0.3
+0.6
no stress control
M9 with sucrose; no stress control
+0.2
+0.2
+0.2
-0.2
+0.1
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.3
+0.2
-0.4
+0.1
+0.3
no stress control
M9 with sucrose; no stress control
+0.1
+0.1
-0.3
+0.4
+0.4
stress
MS_media with m-arsenite 1 mM
-0.3
+0.2
+0.6
+0.2
+0.1
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
+0.3
+0.0
+0.5
-0.2
+0.2
stress
M9 with sucrose and trichloroethylene 76.3 uM
+0.1
+0.1
+0.5
-0.1
+0.4
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EX28DRAFT_2221
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