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Fitness for 5 genes in
Enterobacter asburiae PDN3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
EX28DRAFT_2215 and EX28DRAFT_2216 overlap by 4 nucleotides
EX28DRAFT_2216 and EX28DRAFT_2217 are separated by 68 nucleotides
EX28DRAFT_2217 and EX28DRAFT_2218 are separated by 48 nucleotides
EX28DRAFT_2218 and EX28DRAFT_2219 are separated by 103 nucleotides
EX28DRAFT_2215: EX28DRAFT_2215 - 8-amino-7-oxononanoate synthase, at 2,238,005 to 2,239,162
_2215
EX28DRAFT_2216: EX28DRAFT_2216 - biotin synthase (EC 2.8.1.6), at 2,239,159 to 2,240,199
_2216
EX28DRAFT_2217: EX28DRAFT_2217 - adenosylmethionine-8-amino-7-oxononanoate transaminase, at 2,240,268 to 2,241,575
_2217
EX28DRAFT_2218: EX28DRAFT_2218 - Raf kinase inhibitor-like protein, YbhB/YbcL family, at 2,241,624 to 2,242,100
_2218
EX28DRAFT_2219: EX28DRAFT_2219 - histidine ammonia-lyase (EC 4.3.1.3), at 2,242,204 to 2,243,724
_2219
Group
Condition
EX28DRAFT
_2215
EX28DRAFT
_2216
EX28DRAFT
_2217
EX28DRAFT
_2218
EX28DRAFT
_2219
stress
MS_media with m-arsenite 1 mM
-1.3
-3.0
-1.2
-0.2
-0.1
stress
MS_media with m-arsenite 1 mM
-0.9
-2.8
-1.5
-0.2
-0.3
stress
MS_media with m-arsenite 1 mM
-1.0
-2.6
-1.5
+0.1
-0.1
stress
MS_media with m-arsenite 1 mM
-1.4
-2.2
-1.4
+0.2
-0.1
stress
MS_media with m-arsenite 1 mM
-0.8
-2.4
-1.5
+0.0
-0.1
stress
MS_media with m-arsenite 1 mM
-0.6
-1.9
-1.6
+0.1
-0.3
stress
MS_media with arsenate 5 mM
-0.8
-0.9
-0.8
+0.0
-0.1
no stress control
MS_media no stress control
-0.5
-1.1
-0.5
-0.1
+0.0
stress
MS_media with arsenate 5 mM
-0.9
-0.6
-0.7
+0.1
-0.1
no stress control
MS_media no stress control
-0.3
-1.1
-0.3
-0.3
+0.0
no stress control
MS_media no stress control
-0.2
-1.3
-0.4
-0.1
-0.1
stress
MS_media with arsenate 5 mM
-0.1
-1.1
-0.8
-0.0
-0.1
stress
MS_media with arsenate 5 mM
-0.3
-0.7
-0.7
+0.0
-0.3
stress
MS_media with arsenate 5 mM
-0.3
-0.9
-0.7
+0.1
-0.3
no stress control
MS_media no stress control
-0.2
-0.9
-0.3
-0.2
-0.1
no stress control
MS_media no stress control
-0.4
-1.0
-0.5
+0.1
-0.0
stress
MS_media with arsenate 5 mM
-0.3
-0.5
-0.6
-0.1
-0.2
no stress control
MS_media no stress control
-0.5
-1.1
-0.3
+0.3
-0.1
no stress control
M9 with sucrose; no stress control
-0.1
-0.7
+0.0
+0.2
-0.3
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
-0.0
+0.5
-0.2
-0.6
+0.1
stress
M9 with sucrose and trichloroethylene 76.3 uM
+0.4
-0.7
+0.1
-0.1
+0.2
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
+0.2
+0.3
+0.2
-0.5
-0.2
stress
M9 with sucrose and trichloroethylene 76.3 uM
+0.4
-0.5
+0.2
-0.2
+0.2
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.3
+0.2
-0.6
-0.0
+0.4
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.6
+0.4
-0.3
-0.3
+0.2
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.8
+0.4
+0.4
-0.7
+0.1
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.2
+0.9
-0.2
+0.0
+0.3
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.3
+0.5
+0.0
+0.2
+0.3
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.5
+0.6
-0.2
+0.4
+0.3
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+1.2
+0.8
+0.0
+0.0
+0.3
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