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Fitness for 5 genes in
Enterobacter asburiae PDN3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
EX28DRAFT_2042 and EX28DRAFT_2043 are separated by 135 nucleotides
EX28DRAFT_2043 and EX28DRAFT_2044 are separated by 517 nucleotides
EX28DRAFT_2044 and EX28DRAFT_2045 are separated by 114 nucleotides
EX28DRAFT_2045 and EX28DRAFT_2046 overlap by 1 nucleotides
EX28DRAFT_2042: EX28DRAFT_2042 - DNA segregation ATPase FtsK/SpoIIIE and related proteins, at 2,058,573 to 2,062,274
_2042
EX28DRAFT_2043: EX28DRAFT_2043 - transcriptional regulator, AsnC family, at 2,062,410 to 2,062,904
_2043
EX28DRAFT_2044: EX28DRAFT_2044 - thioredoxin-disulfide reductase, at 2,063,422 to 2,064,417
_2044
EX28DRAFT_2045: EX28DRAFT_2045 - thiol reductant ABC exporter, CydD subunit, at 2,064,532 to 2,066,298
_2045
EX28DRAFT_2046: EX28DRAFT_2046 - thiol reductant ABC exporter, CydC subunit, at 2,066,298 to 2,068,019
_2046
Group
Condition
EX28DRAFT
_2042
EX28DRAFT
_2043
EX28DRAFT
_2044
EX28DRAFT
_2045
EX28DRAFT
_2046
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
N.D.
-0.3
N.D.
-4.2
-4.1
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
N.D.
-1.2
N.D.
-4.3
-2.1
stress
M9 with casaminos and trichloroethylene 76.3 uM
N.D.
-0.1
N.D.
-3.4
-3.3
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
N.D.
+0.1
N.D.
-4.3
-2.4
stress
M9 with casaminos and trichloroethylene 76.3 uM
N.D.
-0.2
N.D.
-2.2
-4.0
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
N.D.
-0.5
N.D.
-3.3
-2.6
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
N.D.
-2.2
N.D.
-2.3
-1.6
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
N.D.
-0.8
N.D.
-2.7
-2.5
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
N.D.
-1.3
N.D.
-2.4
-2.3
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
N.D.
-1.9
N.D.
-2.0
-1.9
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
N.D.
-2.3
N.D.
-1.4
-1.6
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
N.D.
-1.6
N.D.
-1.9
-1.8
stress
M9 with casaminos and trichloroethylene 76.3 uM
N.D.
-0.0
N.D.
-1.5
-3.6
stress
MS_media with m-arsenite 1 mM
N.D.
-5.1
N.D.
-0.5
+0.5
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
N.D.
-1.6
N.D.
-1.7
-1.2
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
N.D.
-0.0
N.D.
-1.7
-2.6
stress
M9 with casaminos and trichloroethylene 76.3 uM
N.D.
-0.1
N.D.
-1.6
-2.6
stress
M9 with sucrose and trichloroethylene 76.3 uM
N.D.
-2.3
N.D.
-0.8
-1.0
stress
M9 with casaminos and trichloroethylene 76.3 uM
N.D.
-0.2
N.D.
-1.2
-2.6
stress
M9 with casaminos and trichloroethylene 76.3 uM
N.D.
-0.4
N.D.
-1.3
-2.2
stress
M9 with casaminos and trichloroethylene 76.3 uM
N.D.
-0.1
N.D.
-1.8
-1.9
stress
MS_media with arsenate 5 mM
N.D.
-1.9
N.D.
-1.6
-0.2
stress
MS_media with m-arsenite 1 mM
N.D.
-3.6
N.D.
-0.3
+0.5
stress
MS_media with m-arsenite 1 mM
N.D.
-2.6
N.D.
-0.8
-0.0
no stress control
M9 with sucrose; no stress control
N.D.
-1.8
N.D.
-1.4
-0.3
stress
MS_media with arsenate 5 mM
N.D.
-2.1
N.D.
-1.3
+0.0
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
N.D.
+0.1
N.D.
-1.6
-1.8
stress
MS_media with arsenate 5 mM
N.D.
-2.4
N.D.
-1.1
+0.3
stress
MS_media with m-arsenite 1 mM
N.D.
-2.7
N.D.
-0.7
+0.4
stress
MS_media with m-arsenite 1 mM
N.D.
-2.7
N.D.
-0.4
+0.3
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