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Cofit
Fitness for 5 genes in
Enterobacter asburiae PDN3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
EX28DRAFT_1895 and EX28DRAFT_1896 are separated by 84 nucleotides
EX28DRAFT_1896 and EX28DRAFT_1897 are separated by 232 nucleotides
EX28DRAFT_1897 and EX28DRAFT_1898 are separated by 45 nucleotides
EX28DRAFT_1898 and EX28DRAFT_1899 are separated by 48 nucleotides
EX28DRAFT_1895: EX28DRAFT_1895 - Histidinol phosphatase and related hydrolases of the PHP family, at 1,904,344 to 1,905,081
_1895
EX28DRAFT_1896: EX28DRAFT_1896 - Phosphoglycerate dehydrogenase and related dehydrogenases, at 1,905,166 to 1,906,104
_1896
EX28DRAFT_1897: EX28DRAFT_1897 - tRNA, at 1,906,337 to 1,906,424
_1897
EX28DRAFT_1898: EX28DRAFT_1898 - RNA, at 1,906,470 to 1,906,607
_1898
EX28DRAFT_1899: EX28DRAFT_1899 - Transcriptional regulator, at 1,906,656 to 1,907,561
_1899
Group
Condition
EX28DRAFT
_1895
EX28DRAFT
_1896
EX28DRAFT
_1897
EX28DRAFT
_1898
EX28DRAFT
_1899
stress
M9 with sucrose and trichloroethylene 76.3 uM
-0.7
-0.8
N.D.
N.D.
-0.0
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
-0.7
-0.3
N.D.
N.D.
-0.1
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
-0.2
-0.9
N.D.
N.D.
+0.1
no stress control
M9 with sucrose; no stress control
-0.9
-0.2
N.D.
N.D.
+0.2
stress
MS_media with arsenate 5 mM
-0.2
-0.4
N.D.
N.D.
-0.2
no stress control
M9 with sucrose; no stress control
-0.8
-0.2
N.D.
N.D.
+0.2
no stress control
M9 with sucrose; no stress control
-0.5
-0.2
N.D.
N.D.
-0.1
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
-0.3
-0.2
N.D.
N.D.
-0.2
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
-0.1
-0.4
N.D.
N.D.
-0.2
stress
M9 with casaminos and trichloroethylene 76.3 uM
-0.6
-0.4
N.D.
N.D.
+0.3
stress
M9 with casaminos and trichloroethylene 76.3 uM
-0.2
-0.6
N.D.
N.D.
+0.1
stress
MS_media with m-arsenite 1 mM
-0.4
-0.4
N.D.
N.D.
+0.2
stress
MS_media with arsenate 5 mM
-0.5
+0.2
N.D.
N.D.
-0.3
no stress control
M9 with sucrose; no stress control
-0.7
-0.1
N.D.
N.D.
+0.4
stress
M9 with casaminos and trichloroethylene 76.3 uM
-0.5
-0.0
N.D.
N.D.
+0.1
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
-0.6
+0.0
N.D.
N.D.
+0.1
stress
M9 with casaminos and trichloroethylene 76.3 uM
-0.5
-0.3
N.D.
N.D.
+0.5
stress
M9 with sucrose and trichloroethylene 76.3 uM
-0.2
-0.5
N.D.
N.D.
+0.4
stress
M9 with casaminos and trichloroethylene 76.3 uM
-0.2
-0.5
N.D.
N.D.
+0.4
stress
M9 with casaminos and trichloroethylene 76.3 uM
-0.4
-0.2
N.D.
N.D.
+0.3
stress
M9 with sucrose and trichloroethylene 76.3 uM
-0.5
-0.1
N.D.
N.D.
+0.4
no stress control
M9 with sucrose; no stress control
-0.3
-0.2
N.D.
N.D.
+0.3
stress
M9 with casaminos and trichloroethylene 76.3 uM
-0.4
-0.3
N.D.
N.D.
+0.6
stress
MS_media with arsenate 5 mM
+0.4
-0.2
N.D.
N.D.
-0.3
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.6
-0.5
N.D.
N.D.
-0.0
stress
M9 with sucrose and trichloroethylene 76.3 uM
-0.3
-0.1
N.D.
N.D.
+0.5
stress
M9 with sucrose and trichloroethylene 76.3 uM
-0.2
-0.0
N.D.
N.D.
+0.5
no stress control
M9 with sucrose; no stress control
+0.4
-0.1
N.D.
N.D.
+0.4
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
+0.7
+0.5
N.D.
N.D.
-0.2
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.8
+0.4
N.D.
N.D.
+0.4
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