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Fitness for 5 genes in
Enterobacter asburiae PDN3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
EX28DRAFT_1870 and EX28DRAFT_1871 are separated by 275 nucleotides
EX28DRAFT_1871 and EX28DRAFT_1872 are separated by 116 nucleotides
EX28DRAFT_1872 and EX28DRAFT_1873 are separated by 59 nucleotides
EX28DRAFT_1873 and EX28DRAFT_1874 are separated by 150 nucleotides
EX28DRAFT_1870: EX28DRAFT_1870 - DinI-like family, at 1,884,134 to 1,884,379
_1870
EX28DRAFT_1871: EX28DRAFT_1871 - BssS protein family, at 1,884,655 to 1,884,909
_1871
EX28DRAFT_1872: EX28DRAFT_1872 - Glycine/D-amino acid oxidases (deaminating), at 1,885,026 to 1,886,144
_1872
EX28DRAFT_1873: EX28DRAFT_1873 - Protein of unknown function (DUF2770), at 1,886,204 to 1,886,317
_1873
EX28DRAFT_1874: EX28DRAFT_1874 - Cytochrome B561, at 1,886,468 to 1,887,091
_1874
Group
Condition
EX28DRAFT
_1870
EX28DRAFT
_1871
EX28DRAFT
_1872
EX28DRAFT
_1873
EX28DRAFT
_1874
stress
MS_media with m-arsenite 1 mM
+0.7
-2.0
-0.4
-1.8
-0.5
stress
MS_media with m-arsenite 1 mM
+0.0
-2.0
-0.1
-0.4
-0.3
stress
MS_media with m-arsenite 1 mM
+0.3
-2.0
-0.1
-0.4
-0.4
stress
MS_media with m-arsenite 1 mM
+0.2
-1.8
+0.1
-0.3
-0.4
stress
MS_media with m-arsenite 1 mM
+0.1
-2.2
-0.1
+0.4
-0.0
stress
MS_media with arsenate 5 mM
+0.3
-0.7
-0.4
-0.5
-0.4
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
-0.6
-0.4
-0.0
-0.5
-0.0
no stress control
M9 with sucrose; no stress control
-0.4
-0.2
-0.1
-0.7
-0.1
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.9
-1.0
+0.0
-1.1
-0.2
stress
MS_media with m-arsenite 1 mM
+0.3
-2.3
-0.1
+0.9
-0.3
stress
MS_media with arsenate 5 mM
+0.1
-0.8
+0.0
-0.5
-0.2
no stress control
M9 with sucrose; no stress control
-0.1
-0.4
-0.1
-0.1
-0.6
stress
M9 with sucrose and trichloroethylene 76.3 uM
-0.2
-0.3
-0.0
-0.5
-0.1
stress
MS_media with arsenate 5 mM
+0.0
-0.9
-0.1
+0.2
-0.2
stress
MS_media with arsenate 5 mM
+0.3
-0.7
-0.1
-0.3
-0.1
stress
M9 with sucrose and trichloroethylene 76.3 uM
+0.2
-0.5
+0.0
-0.2
-0.3
stress
M9 with sucrose and trichloroethylene 76.3 uM
-0.1
-0.3
-0.6
+0.5
-0.2
stress
MS_media with arsenate 5 mM
+0.3
-0.8
+0.3
-0.2
-0.3
stress
M9 with sucrose and trichloroethylene 76.3 uM
+0.3
-0.4
-0.1
-0.3
-0.0
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.2
-0.9
-0.0
+0.1
+0.1
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.3
-0.2
+0.2
-0.4
-0.2
stress
MS_media with arsenate 5 mM
+0.5
-0.9
+0.1
-0.0
+0.0
no stress control
M9 with sucrose; no stress control
+0.6
-0.4
-0.1
-0.2
-0.1
no stress control
M9 with sucrose; no stress control
+0.2
-0.3
-0.1
-0.3
+0.3
stress
M9 with casaminos and trichloroethylene 76.3 uM
+0.5
+0.1
-0.1
-0.6
+0.0
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.5
-0.4
-0.0
+0.3
-0.3
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.6
-0.9
+0.4
+0.7
-0.5
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.3
-0.3
+0.1
+0.3
-0.1
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
+0.9
-0.3
+0.2
+0.2
-0.0
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
+0.6
-0.4
+0.1
+1.1
+0.1
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