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Fitness for 5 genes in
Enterobacter asburiae PDN3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
EX28DRAFT_0065 and EX28DRAFT_0066 are separated by 204 nucleotides
EX28DRAFT_0066 and EX28DRAFT_0067 are separated by 40 nucleotides
EX28DRAFT_0067 and EX28DRAFT_0068 are separated by 313 nucleotides
EX28DRAFT_0068 and EX28DRAFT_0069 are separated by 50 nucleotides
EX28DRAFT_0065: EX28DRAFT_0065 - thioredoxin, at 7,115 to 7,534
_0065
EX28DRAFT_0066: EX28DRAFT_0066 - rRNA methylases, at 7,739 to 8,869
_0066
EX28DRAFT_0067: EX28DRAFT_0067 - Uracil-DNA glycosylase (EC 3.2.2.-), at 8,910 to 9,599
_0067
EX28DRAFT_0068: EX28DRAFT_0068 - autonomous glycyl radical cofactor GrcA, at 9,913 to 10,296
_0068
EX28DRAFT_0069: EX28DRAFT_0069 - Superfamily II DNA and RNA helicases, at 10,347 to 11,675
_0069
Group
Condition
EX28DRAFT
_0065
EX28DRAFT
_0066
EX28DRAFT
_0067
EX28DRAFT
_0068
EX28DRAFT
_0069
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
-3.5
-0.6
-0.1
+0.1
-2.1
stress
MS_media with m-arsenite 1 mM
-0.3
+0.2
+0.1
-4.6
-1.5
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
-2.0
-0.2
-0.3
-1.3
-1.0
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
-1.2
-0.6
+0.0
-1.0
-1.5
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
-2.4
-0.1
+0.0
-1.5
-0.2
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
-0.7
+0.3
-0.4
-0.9
-1.9
stress
M9 with sucrose and trichloroethylene 76.3 uM
-1.5
-0.3
+0.2
-1.2
-0.7
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
-0.4
-0.0
-0.2
+0.4
-3.1
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
-0.3
-0.3
+0.0
-2.3
-0.5
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
-0.4
-0.1
-0.0
-1.1
-1.5
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
-0.4
+0.0
-0.2
-0.3
-2.1
stress
MS_media with m-arsenite 1 mM
+0.1
-0.1
+0.2
-1.4
-1.6
stress
M9 with sucrose and trichloroethylene 76.3 uM
-0.2
-0.5
+0.2
-0.1
-2.0
stress
M9 with casaminos and trichloroethylene 76.3 uM
-0.6
-0.0
-0.1
-1.9
-0.1
no stress control
M9 with sucrose; no stress control
-1.3
-0.2
+0.2
-0.9
-0.4
no stress control
MS_media no stress control
-0.2
+0.1
+0.1
-1.6
-1.0
no stress control
M9 with sucrose; no stress control
-0.9
-0.1
+0.0
-0.8
-0.5
no stress control
MS_media no stress control
+0.6
+0.0
-0.3
-1.3
-1.3
in planta
Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
-1.6
-0.5
-0.4
-0.8
+1.0
stress
M9 with sucrose and trichloroethylene 76.3 uM
-1.7
-0.0
-0.2
+0.2
-0.5
no stress control
M9 with sucrose; no stress control
+0.1
-0.0
+0.2
-1.0
-1.1
stress
MS_media with arsenate 5 mM
-0.2
+0.3
-0.1
-1.6
-0.3
no stress control
MS_media no stress control
-0.4
+0.2
+0.2
-0.7
-1.1
stress
M9 with casaminos and trichloroethylene 76.3 uM
-0.8
-0.1
+0.2
+0.3
-1.1
no stress control
M9 with sucrose; no stress control
-1.5
-0.2
+0.1
+0.5
-0.4
in planta
Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
+0.6
+0.0
-0.2
-0.5
-1.5
no stress control
MS_media no stress control
+0.3
+0.2
+0.2
-1.1
-0.9
stress
MS_media with m-arsenite 1 mM
-0.2
+0.3
+0.2
-1.0
-0.7
stress
MS_media with m-arsenite 1 mM
+1.3
+0.3
+0.2
-2.0
-0.0
stress
MS_media with arsenate 5 mM
+0.9
+0.6
+0.0
-0.5
+0.8
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