Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04877 and EFB2_04878 are separated by 482 nucleotidesEFB2_04878 and EFB2_04879 are separated by 22 nucleotidesEFB2_04879 and EFB2_04880 overlap by 35 nucleotidesEFB2_04880 and EFB2_04881 are separated by 3 nucleotides EFB2_04877: EFB2_04877 - 16S ribosomal RNA, at 5,131,099 to 5,132,636 _04877 EFB2_04878: EFB2_04878 - HTH-type transcriptional repressor NanR, at 5,133,119 to 5,133,811 _04878 EFB2_04879: EFB2_04879 - putative transport protein HsrA, at 5,133,834 to 5,135,261 _04879 EFB2_04880: EFB2_04880 - Ribose operon repressor, at 5,135,227 to 5,136,219 _04880 EFB2_04881: EFB2_04881 - Ribokinase, at 5,136,223 to 5,137,152 _04881
Group Condition EFB2_04877 EFB2_04878 EFB2_04879 EFB2_04880 EFB2_04881
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -0.1 +0.0 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community N.D. +0.1 -0.0 -0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. -0.1 +0.0 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.0 +0.0 -0.1 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.1 -0.0 -0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.1 +0.1 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. +0.1 +0.0 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae N.D. +0.0 +0.1 -0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -0.1 +0.1 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.1 +0.1 -0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.2 +0.1 -0.1 -0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae N.D. +0.1 -0.0 -0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.1 +0.0 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.1 +0.0 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. +0.1 +0.1 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. +0.1 +0.0 -0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -0.0 +0.0 -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. +0.1 +0.0 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.0 +0.1 -0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. +0.1 +0.0 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.1 +0.1 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.2 -0.0 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.2 +0.1 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. +0.1 +0.0 -0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.1 +0.1 -0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.1 +0.1 -0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. +0.2 +0.0 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community N.D. +0.1 +0.1 -0.0 -0.0
no phage control BHIS_CaCl2 no phage control N.D. -0.9 +0.2 +0.4 +0.4
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI N.D. +0.1 +0.1 -0.1 +0.1
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