Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04857 and EFB2_04858 are separated by 130 nucleotidesEFB2_04858 and EFB2_04859 are separated by 135 nucleotidesEFB2_04859 and EFB2_04860 are separated by 46 nucleotidesEFB2_04860 and EFB2_04861 are separated by 86 nucleotides EFB2_04857: EFB2_04857 - Thioredoxin 1, at 5,109,230 to 5,109,559 _04857 EFB2_04858: EFB2_04858 - ATP-dependent RNA helicase RhlB, at 5,109,690 to 5,110,955 _04858 EFB2_04859: EFB2_04859 - Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase, at 5,111,091 to 5,112,575 _04859 EFB2_04860: EFB2_04860 - ATP-dependent DNA helicase Rep, at 5,112,622 to 5,114,643 _04860 EFB2_04861: EFB2_04861 - Peptidyl-prolyl cis-trans isomerase C, at 5,114,730 to 5,115,011 _04861
Group Condition EFB2_04857 EFB2_04858 EFB2_04859 EFB2_04860 EFB2_04861
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -4.6 +0.0 +0.1 N.D. -2.6
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -2.3 -0.0 +0.1 N.D. -2.5
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -3.8 -0.0 -0.0 N.D. -0.5
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -3.7 +0.0 +0.0 N.D. -0.7
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -3.8 -0.1 -0.1 N.D. -0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -2.8 +0.0 -0.0 N.D. -1.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -4.8 -0.1 +0.0 N.D. +0.7
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -3.5 -0.1 -0.0 N.D. -0.5
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -3.3 -0.0 +0.0 N.D. -0.8
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -3.3 -0.0 -0.1 N.D. -0.6
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -3.3 +0.0 -0.1 N.D. -0.7
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -2.9 -0.1 +0.1 N.D. -1.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -4.0 -0.0 +0.1 N.D. -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -2.5 -0.1 +0.0 N.D. -1.3
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -4.4 -0.1 +0.1 N.D. +0.7
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -3.7 +0.0 +0.0 N.D. -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -4.0 -0.0 +0.1 N.D. +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -2.8 -0.1 +0.1 N.D. -0.8
mixed community no phage control BHIS no phage control with 14 member community -4.2 +0.1 +0.1 N.D. +0.7
no phage control BHIS no phage control -3.7 -0.0 -0.1 N.D. +0.5
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -3.9 -0.0 +0.0 N.D. +0.8
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -3.5 -0.0 +0.0 N.D. +0.8
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -3.3 -0.1 -0.1 N.D. +0.9
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -3.1 +0.0 -0.0 N.D. +0.6
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -3.1 -0.1 +0.0 N.D. +0.7
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -3.1 +0.0 -0.0 N.D. +0.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -3.1 +0.0 -0.0 N.D. +1.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -2.5 +0.1 +0.2 N.D. +1.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -2.9 -0.0 +0.0 N.D. +1.7
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -2.3 -0.0 -0.1 N.D. +2.0
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