Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04856 and EFB2_04857 are separated by 326 nucleotidesEFB2_04857 and EFB2_04858 are separated by 130 nucleotidesEFB2_04858 and EFB2_04859 are separated by 135 nucleotidesEFB2_04859 and EFB2_04860 are separated by 46 nucleotides EFB2_04856: EFB2_04856 - Transcription termination factor Rho, at 5,107,644 to 5,108,903 _04856 EFB2_04857: EFB2_04857 - Thioredoxin 1, at 5,109,230 to 5,109,559 _04857 EFB2_04858: EFB2_04858 - ATP-dependent RNA helicase RhlB, at 5,109,690 to 5,110,955 _04858 EFB2_04859: EFB2_04859 - Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase, at 5,111,091 to 5,112,575 _04859 EFB2_04860: EFB2_04860 - ATP-dependent DNA helicase Rep, at 5,112,622 to 5,114,643 _04860
Group Condition EFB2_04856 EFB2_04857 EFB2_04858 EFB2_04859 EFB2_04860
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -4.8 -0.1 +0.0 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -4.6 +0.0 +0.1 N.D.
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae N.D. -4.4 -0.1 +0.1 N.D.
mixed community no phage control BHIS no phage control with 14 member community N.D. -4.2 +0.1 +0.1 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -3.8 -0.1 -0.1 N.D.
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI N.D. -4.0 -0.0 +0.1 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -3.9 -0.0 +0.0 N.D.
no phage control BHIS no phage control N.D. -3.7 -0.0 -0.1 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community N.D. -3.8 -0.0 -0.0 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. -4.0 -0.0 +0.1 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -3.7 +0.0 +0.0 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -3.7 +0.0 +0.0 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -3.3 -0.1 -0.1 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. -3.5 -0.1 -0.0 N.D.
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI N.D. -3.5 -0.0 +0.0 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -3.3 -0.0 -0.1 N.D.
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae N.D. -3.3 +0.0 -0.1 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. -3.3 -0.0 +0.0 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community N.D. -3.2 +0.0 +0.0 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -3.1 -0.1 +0.0 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community N.D. -3.1 +0.0 -0.0 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -3.2 +0.0 +0.1 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae N.D. -3.1 +0.0 -0.0 N.D.
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI N.D. -3.1 -0.0 +0.0 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -3.1 +0.0 -0.0 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -3.0 +0.0 +0.0 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae N.D. -3.0 +0.1 +0.1 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -3.0 +0.0 +0.1 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -2.9 -0.1 +0.1 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -2.8 -0.1 +0.1 N.D.
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