Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04833 and EFB2_04834 overlap by 4 nucleotidesEFB2_04834 and EFB2_04835 are separated by 21 nucleotidesEFB2_04835 and EFB2_04836 are separated by 2 nucleotidesEFB2_04836 and EFB2_04837 are separated by 678 nucleotides EFB2_04833: EFB2_04833 - Porphobilinogen deaminase, at 5,084,535 to 5,085,497 _04833 EFB2_04834: EFB2_04834 - Uroporphyrinogen-III synthase, at 5,085,494 to 5,086,234 _04834 EFB2_04835: EFB2_04835 - Protein HemX, at 5,086,256 to 5,087,503 _04835 EFB2_04836: EFB2_04836 - Protein HemY, at 5,087,506 to 5,088,702 _04836 EFB2_04837: EFB2_04837 - N-acetylgalactosamine-6-O-sulfatase, at 5,089,381 to 5,091,036 _04837
Group Condition EFB2_04833 EFB2_04834 EFB2_04835 EFB2_04836 EFB2_04837
no phage control BHIS_CaCl2 no phage control N.D. N.D. -0.0 -0.4 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. -0.1 +0.0 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. -0.2 +0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. -0.2 +0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. -0.1 -0.1 +0.0
no phage control BHIS no phage control N.D. N.D. -0.2 -0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community N.D. N.D. -0.2 +0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. -0.2 +0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae N.D. N.D. -0.1 +0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. -0.1 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. -0.0 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. -0.1 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. -0.1 -0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. -0.1 +0.1 +0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI N.D. N.D. -0.0 +0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. -0.1 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. -0.0 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community N.D. N.D. -0.0 +0.1 +0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae N.D. N.D. -0.1 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. N.D. -0.0 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community N.D. N.D. +0.0 +0.1 +0.0
mixed community no phage control BHIS no phage control with 14 member community N.D. N.D. +0.1 -0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. +0.1 +0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. +0.1 -0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. +0.2 -0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae N.D. N.D. +0.1 +0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. +0.0 +0.1 +0.1
no phage control BHIS no phage control N.D. N.D. +0.1 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. +0.1 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. +0.1 +0.1 +0.1
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EFB2_04837
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