Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04811 and EFB2_04812 are separated by 7 nucleotidesEFB2_04812 and EFB2_04813 are separated by 110 nucleotidesEFB2_04813 and EFB2_04814 are separated by 60 nucleotidesEFB2_04814 and EFB2_04815 are separated by 63 nucleotides EFB2_04811: EFB2_04811 - Pyridoxal phosphate phosphatase YigL, at 5,062,664 to 5,063,464 _04811 EFB2_04812: EFB2_04812 - Lysophospholipase L2, at 5,063,472 to 5,064,494 _04812 EFB2_04813: EFB2_04813 - Homoserine/homoserine lactone efflux protein, at 5,064,605 to 5,065,225 _04813 EFB2_04814: EFB2_04814 - Threonine efflux protein, at 5,065,286 to 5,065,906 _04814 EFB2_04815: EFB2_04815 - ATP-dependent DNA helicase RecQ, at 5,065,970 to 5,067,805 _04815
Group Condition EFB2_04811 EFB2_04812 EFB2_04813 EFB2_04814 EFB2_04815
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.0 -0.1 -0.2 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 -0.1 +0.0 -0.0 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.1 +0.1 -0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 +0.0 -0.2 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.1 +0.0 -0.2 +0.0
no phage control BHIS no phage control +0.0 -0.0 +0.0 -0.1 -0.1
mixed community no phage control BHIS no phage control with 14 member community -0.2 -0.0 +0.1 -0.1 -0.1
no phage control BHIS no phage control -0.1 +0.0 +0.1 -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 -0.1 -0.0 -0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.1 -0.0 -0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.0 +0.1 -0.2 -0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.1 -0.1 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 +0.0 +0.0 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.1 +0.1 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.0 +0.2 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.0 -0.0 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.0 +0.0 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.1 +0.0 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.0 -0.1 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.0 +0.1 -0.0 -0.1
no phage control BHIS no phage control +0.1 +0.0 +0.1 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 +0.0 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.0 +0.1 +0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.2 +0.0 +0.0 +0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.2 +0.0 +0.1 +0.0 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 +0.0 -0.0 +0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.1 +0.1 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.0 +0.1 +0.1 +0.0
mixed community no phage control BHIS no phage control with 14 member community +0.2 +0.0 +0.1 +0.1 -0.1
no phage control BHIS_CaCl2 no phage control +0.0 +0.0 +0.6 +0.1 +0.2
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