Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04805 and EFB2_04806 are separated by 411 nucleotidesEFB2_04806 and EFB2_04807 overlap by 4 nucleotidesEFB2_04807 and EFB2_04808 are separated by 488 nucleotidesEFB2_04808 and EFB2_04809 are separated by 117 nucleotides EFB2_04805: EFB2_04805 - Major exported protein, at 5,056,593 to 5,056,886 _04805 EFB2_04806: EFB2_04806 - hypothetical protein, at 5,057,298 to 5,057,726 _04806 EFB2_04807: EFB2_04807 - hypothetical protein, at 5,057,723 to 5,057,980 _04807 EFB2_04808: EFB2_04808 - 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase, at 5,058,469 to 5,060,730 _04808 EFB2_04809: EFB2_04809 - HTH-type transcriptional regulator MetR, at 5,060,848 to 5,061,801 _04809
Group Condition EFB2_04805 EFB2_04806 EFB2_04807 EFB2_04808 EFB2_04809
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.0 -0.5 +0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.4 -0.1 -0.0 -0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.3 +0.1 -0.2 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.0 -0.5 -0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.3 -0.1 +0.0 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.5 +0.0 +0.0 -0.0 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.4 +0.1 +0.1 +0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.5 +0.1 +0.2 +0.1 -0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.2 -0.1 -0.3 +0.0 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.3 -0.1 +0.2 -0.1 -0.0
mixed community no phage control BHIS no phage control with 14 member community -0.3 +0.1 -0.0 -0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.2 -0.3 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.0 -0.3 -0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 -0.1 +0.1 +0.0 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 -0.1 +0.2 +0.1 +0.1
no phage control BHIS_CaCl2 no phage control -0.7 -0.9 +1.3 +0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 +0.1 +0.1 -0.1 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.3 +0.2 +0.1 +0.1 -0.0
no phage control BHIS_CaCl2 no phage control -0.2 +0.1 +0.2 +0.0 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.0 +0.3 -0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.2 -0.3 +0.0 +0.2
no phage control BHIS no phage control +0.1 -0.2 +0.3 +0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.3 +0.1 -0.0 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.2 +0.2 -0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.3 +0.0 -0.1 +0.0 +0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.1 +0.3 +0.0 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.2 +0.1 +0.0 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 -0.2 +0.1 -0.0 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.1 +0.2 +0.0 +0.2
no phage control BHIS no phage control -0.0 +0.2 +0.2 +0.0 +0.1
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EFB2_04805
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EFB2_04809
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