Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04783 and EFB2_04784 are separated by 216 nucleotidesEFB2_04784 and EFB2_04785 are separated by 23 nucleotidesEFB2_04785 and EFB2_04786 overlap by 11 nucleotidesEFB2_04786 and EFB2_04787 are separated by 24 nucleotides EFB2_04783: EFB2_04783 - hypothetical protein, at 5,033,471 to 5,034,898 _04783 EFB2_04784: EFB2_04784 - HTH-type transcriptional regulator XynR, at 5,035,115 to 5,035,882 _04784 EFB2_04785: EFB2_04785 - putative 2-dehydro-3-deoxygalactonokinase DgoK1, at 5,035,906 to 5,036,910 _04785 EFB2_04786: EFB2_04786 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 5,036,900 to 5,037,529 _04786 EFB2_04787: EFB2_04787 - hypothetical protein, at 5,037,554 to 5,038,528 _04787
Group Condition EFB2_04783 EFB2_04784 EFB2_04785 EFB2_04786 EFB2_04787
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.1 -0.1 -0.0 -0.1
no phage control BHIS no phage control -0.0 -0.0 -0.1 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.1 -0.0 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.0 -0.0 +0.0 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.0 -0.1 -0.2 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 -0.0 -0.1 -0.2 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 +0.1 -0.1 -0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.1 -0.1 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 -0.1 -0.0 -0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.1 -0.0 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.0 -0.1 -0.0 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.1 -0.0 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.1 -0.0 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 +0.0 -0.2 +0.0 +0.0
mixed community no phage control BHIS no phage control with 14 member community -0.0 -0.1 +0.0 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.1 +0.1 +0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.0 +0.0 +0.1 -0.0 -0.1
mixed community no phage control BHIS no phage control with 14 member community -0.1 +0.0 +0.0 +0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.1 -0.1 +0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.0 +0.0 +0.1 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.0 +0.0 +0.0 +0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.1 -0.0 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.0 +0.1 -0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.0 +0.0 +0.1 +0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 +0.0 +0.1 -0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.1 +0.1 +0.0 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.0 +0.0 +0.0 +0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 +0.1 +0.1 +0.0 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 -0.1 +0.1 +0.0 +0.1
no phage control BHIS_CaCl2 no phage control -0.0 +0.2 +0.2 +0.3 +0.1
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