Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04766 and EFB2_04767 are separated by 380 nucleotidesEFB2_04767 and EFB2_04768 are separated by 11 nucleotidesEFB2_04768 and EFB2_04769 are separated by 38 nucleotidesEFB2_04769 and EFB2_04770 overlap by 1 nucleotides EFB2_04766: EFB2_04766 - 16S ribosomal RNA, at 5,015,269 to 5,016,806 _04766 EFB2_04767: EFB2_04767 - Protoporphyrinogen IX dehydrogenase [menaquinone], at 5,017,187 to 5,017,732 _04767 EFB2_04768: EFB2_04768 - Trk system potassium uptake protein TrkH, at 5,017,744 to 5,019,195 _04768 EFB2_04769: EFB2_04769 - IMPACT family member YigZ, at 5,019,234 to 5,019,848 _04769 EFB2_04770: EFB2_04770 - Xaa-Pro dipeptidase, at 5,019,848 to 5,021,179 _04770
Group Condition EFB2_04766 EFB2_04767 EFB2_04768 EFB2_04769 EFB2_04770
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. -3.3 -0.2 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. -3.2 +0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. -2.7 -0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. -2.8 +0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. -2.8 +0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. -2.5 +0.0 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae N.D. N.D. -2.4 +0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. -2.4 -0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. -2.4 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. -2.3 +0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. -2.3 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community N.D. N.D. -2.3 -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. -2.2 -0.0 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. -2.1 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. -2.2 +0.0 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. -2.1 -0.0 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. -2.0 -0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. N.D. -1.7 -0.3 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. N.D. -1.9 -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. -2.0 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community N.D. N.D. -1.9 -0.0 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI N.D. N.D. -1.8 -0.0 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. -1.8 +0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. N.D. -1.8 +0.1 -0.0
no phage control BHIS no phage control N.D. N.D. -1.8 +0.0 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae N.D. N.D. -1.7 +0.1 +0.0
mixed community no phage control BHIS no phage control with 14 member community N.D. N.D. -1.7 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. -1.8 +0.2 +0.0
no phage control BHIS_CaCl2 no phage control N.D. N.D. -1.7 +0.1 +0.0
mixed community no phage control BHIS no phage control with 14 member community N.D. N.D. -1.7 +0.1 +0.0
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