Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04739 and EFB2_04740 are separated by 172 nucleotidesEFB2_04740 and EFB2_04741 are separated by 39 nucleotidesEFB2_04741 and EFB2_04742 are separated by 59 nucleotidesEFB2_04742 and EFB2_04743 are separated by 101 nucleotides EFB2_04739: EFB2_04739 - 3-sulfolactaldehyde reductase, at 4,986,277 to 4,987,155 _04739 EFB2_04740: EFB2_04740 - Sulfofructose kinase, at 4,987,328 to 4,988,224 _04740 EFB2_04741: EFB2_04741 - HTH-type transcriptional repressor CsqR, at 4,988,264 to 4,989,052 _04741 EFB2_04742: EFB2_04742 - Inner membrane protein YihN, at 4,989,112 to 4,990,368 _04742 EFB2_04743: EFB2_04743 - hypothetical protein, at 4,990,470 to 4,991,450 _04743
Group Condition EFB2_04739 EFB2_04740 EFB2_04741 EFB2_04742 EFB2_04743
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.1 -0.2 -0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 -0.0 -0.3 +0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.1 +0.1 -0.0 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.1 -0.1 -0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.0 -0.2 -0.0 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.1 +0.0 -0.0 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.2 +0.0 -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.1 +0.0 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 +0.1 +0.1 -0.1 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.1 +0.1 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.0 +0.1 -0.1 -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.0 +0.1 -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.0 -0.2 +0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.1 +0.1 +0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.1 +0.1 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.0 +0.2 -0.1 -0.1
mixed community no phage control BHIS no phage control with 14 member community -0.1 -0.0 +0.2 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.1 -0.1 -0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.1 +0.1 -0.1 -0.0
no phage control BHIS no phage control -0.0 -0.0 -0.1 +0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 +0.0 +0.0 -0.1 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 +0.1 -0.0 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 +0.2 -0.2 +0.0 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.1 +0.3 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.1 -0.1 +0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.1 +0.2 +0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.1 -0.1 +0.0 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.0 +0.1 +0.0 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.1 +0.2 +0.0 +0.1
no phage control BHIS_CaCl2 no phage control +0.2 +0.3 -0.1 +0.1 +0.3
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