Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04677 and EFB2_04678 are separated by 217 nucleotidesEFB2_04678 and EFB2_04679 are separated by 2 nucleotidesEFB2_04679 and EFB2_04680 are separated by 276 nucleotidesEFB2_04680 and EFB2_04681 are separated by 59 nucleotides EFB2_04677: EFB2_04677 - Nucleoside-specific channel-forming protein Tsx, at 4,926,972 to 4,927,832 _04677 EFB2_04678: EFB2_04678 - Bifunctional aspartokinase/homoserine dehydrogenase 2, at 4,928,050 to 4,930,482 _04678 EFB2_04679: EFB2_04679 - Cystathionine gamma-synthase, at 4,930,485 to 4,931,645 _04679 EFB2_04680: EFB2_04680 - Met repressor, at 4,931,922 to 4,932,239 _04680 EFB2_04681: EFB2_04681 - hypothetical protein, at 4,932,299 to 4,932,907 _04681
Group Condition EFB2_04677 EFB2_04678 EFB2_04679 EFB2_04680 EFB2_04681
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.4 -0.0 -2.8 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.7 -0.0 -2.6 -0.2
no phage control BHIS_CaCl2 no phage control +0.8 -0.9 -0.3 -2.8 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.6 -0.1 -2.2 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.8 +0.0 -2.4 +0.0
no phage control BHIS no phage control +0.2 -1.0 +0.0 -1.9 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.6 -0.0 -1.8 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.2 -0.7 +0.1 -1.6 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.7 +0.0 -1.5 -0.2
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.0 -0.6 +0.0 -1.7 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.7 +0.1 -1.7 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.7 +0.0 -1.7 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.6 -0.0 -1.6 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.8 +0.0 -1.5 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.2 -0.6 -0.1 -1.3 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.0 -0.6 -0.1 -1.4 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.6 -0.1 -1.5 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.8 +0.0 -1.5 +0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.8 -0.0 -1.3 +0.0
no phage control BHIS_CaCl2 no phage control -0.1 -0.7 -0.0 -1.0 -0.1
no phage control BHIS no phage control -0.1 -1.1 +0.0 -0.9 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.7 -0.0 -0.9 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.1 -0.5 -0.0 -1.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.7 +0.0 -1.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.6 +0.1 -1.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.8 +0.1 -1.0 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.9 -0.0 -0.9 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.4 +0.1 -1.0 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.9 +0.1 -0.9 +0.1
no phage control BHIS no phage control +0.2 -0.9 -0.1 -0.6 +0.1
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