Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04643 and EFB2_04644 overlap by 56 nucleotidesEFB2_04644 and EFB2_04645 are separated by 368 nucleotidesEFB2_04645 and EFB2_04646 are separated by 39 nucleotidesEFB2_04646 and EFB2_04647 overlap by 1 nucleotides EFB2_04643: EFB2_04643 - Glutamate racemase, at 4,881,204 to 4,882,061 _04643 EFB2_04644: EFB2_04644 - Vitamin B12 transporter BtuB, at 4,882,006 to 4,883,844 _04644 EFB2_04645: EFB2_04645 - tRNA/tmRNA (uracil-C(5))-methyltransferase, at 4,884,213 to 4,885,313 _04645 EFB2_04646: EFB2_04646 - Inner membrane protein YijD, at 4,885,353 to 4,885,712 _04646 EFB2_04647: EFB2_04647 - HTH-type transcriptional repressor FabR, at 4,885,712 to 4,886,416 _04647
Group Condition EFB2_04643 EFB2_04644 EFB2_04645 EFB2_04646 EFB2_04647
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -0.1 +0.1 -0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -0.1 -0.1 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -0.2 -0.1 +0.2 -0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI N.D. -0.1 -0.0 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community N.D. -0.1 -0.0 -0.1 +0.1
no phage control BHIS_CaCl2 no phage control N.D. -0.0 -0.0 +0.4 -0.5
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.1 -0.1 -0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community N.D. -0.1 -0.0 -0.1 +0.1
no phage control BHIS_CaCl2 no phage control N.D. -0.1 +0.0 -0.2 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.2 -0.0 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -0.1 -0.2 -0.0 +0.3
no phage control BHIS no phage control N.D. -0.1 -0.1 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -0.1 -0.1 +0.0 +0.2
mixed community no phage control BHIS no phage control with 14 member community N.D. -0.1 -0.0 +0.1 +0.1
no phage control BHIS_CaCl2 no phage control N.D. -0.1 -0.1 +0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community N.D. -0.1 -0.0 -0.0 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -0.1 -0.0 +0.1 +0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae N.D. -0.1 -0.0 +0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.1 -0.0 +0.1 +0.1
no phage control BHIS no phage control N.D. -0.0 -0.1 +0.1 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -0.1 -0.1 +0.1 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -0.1 +0.1 -0.0 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. -0.1 -0.1 +0.2 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -0.0 +0.0 +0.0 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae N.D. -0.0 +0.1 +0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -0.1 +0.1 -0.1 +0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -0.0 -0.1 +0.3 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.1 +0.1 +0.1 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -0.1 +0.0 +0.2 +0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.0 -0.0 +0.0 +0.4
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