Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04620 and EFB2_04621 are separated by 1 nucleotidesEFB2_04621 and EFB2_04622 overlap by 4 nucleotidesEFB2_04622 and EFB2_04623 are separated by 241 nucleotidesEFB2_04623 and EFB2_04624 are separated by 76 nucleotides EFB2_04620: EFB2_04620 - Sulfur carrier protein ThiS, at 4,855,945 to 4,856,145 _04620 EFB2_04621: EFB2_04621 - Thiazole synthase, at 4,856,147 to 4,856,917 _04621 EFB2_04622: EFB2_04622 - 2-iminoacetate synthase, at 4,856,914 to 4,858,047 _04622 EFB2_04623: EFB2_04623 - DNA-directed RNA polymerase subunit beta', at 4,858,289 to 4,862,512 _04623 EFB2_04624: EFB2_04624 - DNA-directed RNA polymerase subunit beta, at 4,862,589 to 4,866,617 _04624
Group Condition EFB2_04620 EFB2_04621 EFB2_04622 EFB2_04623 EFB2_04624
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 -0.2 +0.0 -3.6 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.6 +0.0 -3.0 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.2 +0.1 -3.6 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.1 -0.0 -3.7 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.2 -0.0 -3.6 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.2 +0.2 +0.0 -3.6 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.2 -0.0 -3.6 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.5 +0.1 -3.0 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.0 +0.0 -3.0 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.4 +0.1 +0.1 -3.6 N.D.
no phage control BHIS_CaCl2 no phage control +0.2 +0.1 +0.0 -3.4 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.1 +0.0 -3.0 N.D.
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.3 +0.1 -0.0 -3.3 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.4 -0.1 +0.0 -2.7 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.1 +0.1 -2.7 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 +0.4 +0.0 -2.6 N.D.
no phage control BHIS_CaCl2 no phage control -0.2 +0.5 +0.2 -2.7 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 +0.0 -0.0 -2.0 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.4 -0.2 -0.0 -1.2 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.3 -0.0 +0.0 -1.9 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.4 -0.0 -1.8 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.1 +0.0 -1.5 N.D.
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.1 +0.0 -0.0 -1.5 N.D.
mixed community no phage control BHIS no phage control with 14 member community -0.0 +0.2 +0.1 -1.7 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.2 -0.1 +0.0 -1.4 N.D.
mixed community no phage control BHIS no phage control with 14 member community +0.2 -0.0 +0.0 -1.3 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.4 +0.3 -0.0 -1.5 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.5 -0.1 +0.1 -1.1 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.2 +0.2 -0.0 +2.2 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 +0.0 +0.1 +2.3 N.D.
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