Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04605 and EFB2_04606 overlap by 4 nucleotidesEFB2_04606 and EFB2_04607 overlap by 4 nucleotidesEFB2_04607 and EFB2_04608 are separated by 106 nucleotidesEFB2_04608 and EFB2_04609 are separated by 2 nucleotides EFB2_04605: EFB2_04605 - Phosphoribosylamine--glycine ligase, at 4,842,878 to 4,844,167 _04605 EFB2_04606: EFB2_04606 - Transcriptional regulatory protein ZraR, at 4,844,164 to 4,845,489 _04606 EFB2_04607: EFB2_04607 - Sensor protein ZraS, at 4,845,486 to 4,846,862 _04607 EFB2_04608: EFB2_04608 - hypothetical protein, at 4,846,969 to 4,847,097 _04608 EFB2_04609: EFB2_04609 - Zinc resistance-associated protein, at 4,847,100 to 4,847,519 _04609
Group Condition EFB2_04605 EFB2_04606 EFB2_04607 EFB2_04608 EFB2_04609
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.1 -0.1 -0.3 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.0 -0.1 -0.4 -0.0
no phage control BHIS_CaCl2 no phage control -0.1 +0.4 +0.2 -0.6 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 +0.0 +0.1 -0.4 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 +0.0 -0.0 -0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.1 +0.1 -0.3 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 +0.1 -0.1 -0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.0 -0.1 +0.3 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 -0.0 -0.0 +0.3 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.0 -0.2 +0.3 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.4 +0.0 -0.0 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.0 -0.1 +0.2 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.0 -0.1 +0.3 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.2 -0.1 +0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.0 -0.1 +0.4 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.1 -0.0 +0.3 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.0 -0.0 +0.4 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.0 -0.1 +0.4 -0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.0 +0.1 +0.3 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.0 -0.0 -0.1 +0.4 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.1 -0.0 +0.3 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.1 -0.0 +0.4 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.1 -0.1 +0.4 +0.0
no phage control BHIS no phage control +0.1 +0.0 -0.0 +0.4 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.0 +0.0 +0.3 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.0 +0.0 +0.3 +0.2
mixed community no phage control BHIS no phage control with 14 member community +0.2 +0.0 -0.1 +0.3 +0.0
no phage control BHIS_CaCl2 no phage control +0.0 +0.0 +0.0 +0.4 +0.1
mixed community no phage control BHIS no phage control with 14 member community +0.0 -0.0 -0.0 +0.6 +0.0
no phage control BHIS no phage control +0.3 +0.0 +0.0 +0.4 -0.0
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