Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04569 and EFB2_04570 are separated by 14 nucleotidesEFB2_04570 and EFB2_04571 are separated by 93 nucleotidesEFB2_04571 and EFB2_04572 overlap by 4 nucleotidesEFB2_04572 and EFB2_04573 are separated by 384 nucleotides EFB2_04569: EFB2_04569 - Maltose/maltodextrin transport system permease protein MalF, at 4,801,098 to 4,802,642 _04569 EFB2_04570: EFB2_04570 - Maltose/maltodextrin transport system permease protein MalG, at 4,802,657 to 4,803,547 _04570 EFB2_04571: EFB2_04571 - Protein PsiE, at 4,803,641 to 4,804,051 _04571 EFB2_04572: EFB2_04572 - hypothetical protein, at 4,804,048 to 4,804,206 _04572 EFB2_04573: EFB2_04573 - hypothetical protein, at 4,804,591 to 4,806,687 _04573
Group Condition EFB2_04569 EFB2_04570 EFB2_04571 EFB2_04572 EFB2_04573
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.1 -0.1 -0.5 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.1 +0.1 -0.3 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.0 +0.1 -0.2 -0.2 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.0 -0.1 -0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.1 -0.2 -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.1 +0.0 +0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.0 +0.1 -0.3 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.1 -0.4 +0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.0 -0.1 -0.2 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 -0.3 -0.0 +0.1
no phage control BHIS no phage control -0.0 +0.2 -0.1 -0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.0 -0.1 -0.1 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.0 -0.2 +0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.1 -0.1 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.0 +0.1 -0.0 -0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.1 -0.1 +0.1 +0.1
mixed community no phage control BHIS no phage control with 14 member community -0.0 -0.1 +0.1 -0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 +0.1 +0.0 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.0 -0.1 +0.2 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.0 +0.0 +0.1 +0.1
no phage control BHIS_CaCl2 no phage control +0.1 +0.2 +0.5 -0.6 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.1 +0.2 -0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.1 +0.2 -0.0 -0.1
no phage control BHIS no phage control -0.0 -0.0 +0.0 +0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.1 +0.1 +0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.0 +0.1 +0.3 +0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.0 +0.1 +0.2 +0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 +0.0 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.1 +0.1 +0.3 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.2 +0.3 +0.0 +0.1
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