Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04560 and EFB2_04561 are separated by 109 nucleotidesEFB2_04561 and EFB2_04562 are separated by 170 nucleotidesEFB2_04562 and EFB2_04563 are separated by 154 nucleotidesEFB2_04563 and EFB2_04564 are separated by 12 nucleotides EFB2_04560: EFB2_04560 - LexA repressor, at 4,790,223 to 4,790,831 _04560 EFB2_04561: EFB2_04561 - Diacylglycerol kinase, at 4,790,941 to 4,791,309 _04561 EFB2_04562: EFB2_04562 - Glycerol-3-phosphate acyltransferase, at 4,791,480 to 4,793,903 _04562 EFB2_04563: EFB2_04563 - 4-hydroxybenzoate octaprenyltransferase, at 4,794,058 to 4,794,930 _04563 EFB2_04564: EFB2_04564 - Chorismate pyruvate-lyase, at 4,794,943 to 4,795,440 _04564
Group Condition EFB2_04560 EFB2_04561 EFB2_04562 EFB2_04563 EFB2_04564
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -4.3 -2.8 -3.7 N.D. +0.1
mixed community no phage control BHIS no phage control with 14 member community -5.0 -3.5 -1.6 N.D. -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -2.2 -4.1 -2.8 N.D. -0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -2.6 -2.9 -3.4 N.D. -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -4.6 -4.0 -0.3 N.D. -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -2.4 -3.3 -2.9 N.D. +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -4.6 -4.1 +0.1 N.D. +0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -4.3 -3.1 -1.3 N.D. +0.1
mixed community no phage control BHIS no phage control with 14 member community -3.9 -3.4 -1.2 N.D. +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -4.6 -4.1 +0.5 N.D. -0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -5.0 -3.5 +0.5 N.D. -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -5.1 -3.5 +0.2 N.D. +0.2
no phage control BHIS_CaCl2 no phage control -3.7 -1.7 -3.1 N.D. +0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -4.5 -2.3 -1.1 N.D. -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -2.5 -4.1 -1.5 N.D. +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -4.6 -3.0 -0.2 N.D. -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -4.6 -4.1 +0.9 N.D. +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -4.6 -2.5 -0.4 N.D. -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -4.9 -3.2 +0.2 N.D. +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -3.7 -4.1 +0.2 N.D. +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -5.0 -1.0 -1.6 N.D. +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -4.6 -2.3 -0.3 N.D. -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -4.6 -1.9 -0.8 N.D. +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -3.1 -1.9 -1.8 N.D. -0.5
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -3.4 -2.7 -0.9 N.D. -0.2
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -1.4 -3.8 -2.1 N.D. +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -1.1 -4.0 -2.0 N.D. +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -1.9 -4.1 -0.7 N.D. -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -5.0 -1.8 -0.1 N.D. +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -2.8 -4.1 +0.7 N.D. +0.0
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