Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04555 and EFB2_04556 are separated by 133 nucleotidesEFB2_04556 and EFB2_04557 are separated by 155 nucleotidesEFB2_04557 and EFB2_04558 are separated by 41 nucleotidesEFB2_04558 and EFB2_04559 are separated by 115 nucleotides EFB2_04555: EFB2_04555 - Phage shock protein G, at 4,786,416 to 4,786,658 _04555 EFB2_04556: EFB2_04556 - tRNA-dihydrouridine(20/20a) synthase, at 4,786,792 to 4,787,787 _04556 EFB2_04557: EFB2_04557 - Zinc uptake regulation protein, at 4,787,943 to 4,788,458 _04557 EFB2_04558: EFB2_04558 - hypothetical protein, at 4,788,500 to 4,788,709 _04558 EFB2_04559: EFB2_04559 - DNA damage-inducible protein F, at 4,788,825 to 4,790,150 _04559
Group Condition EFB2_04555 EFB2_04556 EFB2_04557 EFB2_04558 EFB2_04559
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.2 -0.2 -0.9 +0.0 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.2 -0.7 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.2 -0.7 -0.1 -0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.4 -0.2 -0.4 +0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 -0.2 -0.7 -0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 -0.2 -0.9 +0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.2 -0.8 -0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.3 -0.7 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.0 -0.2 -0.7 +0.0 -0.0
mixed community no phage control BHIS no phage control with 14 member community -0.1 -0.2 -0.5 -0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 -0.2 -0.6 -0.2 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 -0.2 -0.6 +0.0 -0.1
mixed community no phage control BHIS no phage control with 14 member community -0.1 -0.3 -0.5 +0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.0 -0.2 -0.7 +0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.1 -0.5 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 -0.2 -0.5 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.3 -0.2 -0.6 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 -0.3 -0.4 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.2 -0.2 -0.7 +0.1 -0.1
mixed community no phage control BHIS no phage control with 14 member community +0.2 -0.2 -0.5 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 -0.1 -0.6 -0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.1 -0.7 +0.2 -0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.2 -0.2 -0.5 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 -0.1 -0.7 -0.0 +0.1
no phage control BHIS no phage control -0.1 -0.2 -0.5 +0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 -0.2 -0.6 -0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.4 -0.1 -0.6 -0.0 -0.0
no phage control BHIS_CaCl2 no phage control +0.5 -0.2 -0.6 -0.4 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.3 -0.0 -0.6 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.5 -0.1 -0.6 -0.1 +0.1
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