Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04547 and EFB2_04548 are separated by 52 nucleotidesEFB2_04548 and EFB2_04549 are separated by 72 nucleotidesEFB2_04549 and EFB2_04550 are separated by 255 nucleotidesEFB2_04550 and EFB2_04551 overlap by 8 nucleotides EFB2_04547: EFB2_04547 - Alanine racemase, biosynthetic, at 4,775,380 to 4,776,459 _04547 EFB2_04548: EFB2_04548 - Replicative DNA helicase, at 4,776,512 to 4,777,927 _04548 EFB2_04549: EFB2_04549 - HTH-type transcriptional repressor CytR, at 4,778,000 to 4,779,034 _04549 EFB2_04550: EFB2_04550 - Caffeate CoA-transferase, at 4,779,290 to 4,780,861 _04550 EFB2_04551: EFB2_04551 - Short-chain-enoyl-CoA hydratase, at 4,780,854 to 4,781,633 _04551
Group Condition EFB2_04547 EFB2_04548 EFB2_04549 EFB2_04550 EFB2_04551
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -7.0 N.D. -0.1 -0.0 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -7.2 N.D. +0.1 -0.0 -0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -7.2 N.D. +0.0 +0.0 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -7.0 N.D. -0.0 +0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -7.2 N.D. -0.0 -0.0 +0.1
mixed community no phage control BHIS no phage control with 14 member community -7.1 N.D. +0.1 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -7.0 N.D. -0.0 +0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -6.9 N.D. -0.0 -0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -6.8 N.D. +0.0 -0.0 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -7.0 N.D. +0.1 -0.0 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -7.1 N.D. +0.1 +0.1 -0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -7.1 N.D. +0.1 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -6.9 N.D. -0.0 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -6.9 N.D. -0.1 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -7.0 N.D. +0.0 +0.1 -0.0
mixed community no phage control BHIS no phage control with 14 member community -7.1 N.D. -0.0 +0.0 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -7.0 N.D. -0.0 +0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -7.1 N.D. +0.0 +0.0 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -7.1 N.D. +0.0 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -7.0 N.D. +0.0 -0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -7.0 N.D. +0.0 +0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -7.0 N.D. +0.0 +0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -6.9 N.D. -0.0 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -7.0 N.D. +0.1 +0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -7.0 N.D. +0.1 +0.0 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -7.0 N.D. +0.1 +0.0 +0.2
mixed community no phage control BHIS no phage control with 14 member community -6.9 N.D. +0.1 +0.0 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -6.8 N.D. +0.1 -0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -7.0 N.D. +0.0 +0.0 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -6.9 N.D. +0.0 +0.0 +0.3
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