Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04540 and EFB2_04541 are separated by 211 nucleotidesEFB2_04541 and EFB2_04542 are separated by 12 nucleotidesEFB2_04542 and EFB2_04543 are separated by 21 nucleotidesEFB2_04543 and EFB2_04544 are separated by 11 nucleotides EFB2_04540: EFB2_04540 - Inner membrane protein YbhI, at 4,764,604 to 4,766,103 _04540 EFB2_04541: EFB2_04541 - Succinate--CoA ligase [ADP-forming] subunit alpha, at 4,766,315 to 4,767,187 _04541 EFB2_04542: EFB2_04542 - Succinate--CoA ligase [ADP-forming] subunit beta, at 4,767,200 to 4,768,369 _04542 EFB2_04543: EFB2_04543 - Dihydrolipoyl dehydrogenase, at 4,768,391 to 4,769,809 _04543 EFB2_04544: EFB2_04544 - Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, at 4,769,821 to 4,770,975 _04544
Group Condition EFB2_04540 EFB2_04541 EFB2_04542 EFB2_04543 EFB2_04544
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 -0.0 +0.0 -0.0 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.0 +0.1 -0.0 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.0 -0.1 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.2 +0.0 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.1 -0.0 +0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.0 -0.1 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.1 +0.0 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.0 -0.1 +0.0 +0.1 -0.1
no phage control BHIS no phage control +0.1 -0.1 -0.1 +0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.1 +0.1 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 -0.1 +0.1 +0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.2 +0.1 +0.0 -0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.0 -0.0 -0.0 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.1 +0.1 +0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.2 -0.1 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.1 +0.0 -0.1 -0.1
mixed community no phage control BHIS no phage control with 14 member community +0.1 -0.2 -0.1 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.0 +0.1 +0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.1 +0.1 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.0 -0.1 -0.0 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.0 +0.0 +0.2 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.1 +0.1 +0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.1 +0.1 -0.0 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.0 -0.0 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.0 +0.1 +0.2 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.2 +0.0 +0.1 -0.0
no phage control BHIS_CaCl2 no phage control -0.1 +0.4 +0.1 -0.4 +0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.1 +0.0 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 +0.2 +0.1 +0.1 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.1 +0.1 +0.1 +0.1
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