Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04492 and EFB2_04493 are separated by 358 nucleotidesEFB2_04493 and EFB2_04494 are separated by 58 nucleotidesEFB2_04494 and EFB2_04495 are separated by 127 nucleotidesEFB2_04495 and EFB2_04496 overlap by 22 nucleotides EFB2_04492: EFB2_04492 - Ribose-5-phosphate isomerase B, at 4,710,185 to 4,710,634 _04492 EFB2_04493: EFB2_04493 - HTH-type transcriptional regulator RpiR, at 4,710,993 to 4,711,883 _04493 EFB2_04494: EFB2_04494 - D-allose-binding periplasmic protein, at 4,711,942 to 4,712,877 _04494 EFB2_04495: EFB2_04495 - Ribose import ATP-binding protein RbsA, at 4,713,005 to 4,714,537 _04495 EFB2_04496: EFB2_04496 - D-allose transport system permease protein AlsC, at 4,714,516 to 4,715,496 _04496
Group Condition EFB2_04492 EFB2_04493 EFB2_04494 EFB2_04495 EFB2_04496
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.3 -0.1 -0.2 -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.3 -0.0 -0.1 -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 -0.1 -0.1 -0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.1 -0.2 -0.0 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.0 -0.2 -0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.1 -0.2 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.0 -0.1 -0.2 -0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.1 -0.1 -0.1 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.2 -0.0 -0.2 -0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.1 -0.2 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 -0.2 -0.1 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 +0.0 -0.2 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 -0.1 -0.1 +0.0 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.2 -0.1 -0.0 +0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.1 -0.1 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.1 -0.1 -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.0 -0.2 +0.0 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.0 -0.1 -0.2 -0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.0 -0.1 -0.1 -0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.0 -0.2 -0.0 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.2 +0.0 +0.1 +0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.2 +0.1 +0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.1 -0.1 -0.0 -0.1
mixed community no phage control BHIS no phage control with 14 member community +0.1 -0.1 +0.1 -0.1 -0.1
no phage control BHIS_CaCl2 no phage control -0.5 +0.2 -0.4 +0.1 +0.5
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.0 -0.1 +0.0 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.1 -0.1 -0.0 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.0 -0.2 +0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.1 -0.2 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.1 +0.1 +0.1 -0.1
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