Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04474 and EFB2_04475 are separated by 402 nucleotidesEFB2_04475 and EFB2_04476 are separated by 159 nucleotidesEFB2_04476 and EFB2_04477 are separated by 132 nucleotidesEFB2_04477 and EFB2_04478 are separated by 24 nucleotides EFB2_04474: EFB2_04474 - Clamp-binding protein CrfC, at 4,695,210 to 4,697,465 _04474 EFB2_04475: EFB2_04475 - hypothetical protein, at 4,697,868 to 4,698,203 _04475 EFB2_04476: EFB2_04476 - hypothetical protein, at 4,698,363 to 4,698,806 _04476 EFB2_04477: EFB2_04477 - Phosphate-import ATP-binding protein PhnC, at 4,698,939 to 4,699,727 _04477 EFB2_04478: EFB2_04478 - hypothetical protein, at 4,699,752 to 4,700,768 _04478
Group Condition EFB2_04474 EFB2_04475 EFB2_04476 EFB2_04477 EFB2_04478
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.0 -0.1 -0.2 -0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.0 -0.2 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.1 -0.1 -0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.1 -0.3 -0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 -0.1 -0.3 -0.1 +0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.0 -0.1 -0.3 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.0 -0.2 -0.1 -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.1 -0.1 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.0 -0.2 +0.1 -0.1 -0.2
no phage control BHIS no phage control -0.0 -0.0 +0.2 -0.3 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.2 -0.0 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 -0.2 -0.2 -0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.1 +0.2 -0.4 +0.0
no phage control BHIS_CaCl2 no phage control +0.1 -0.3 -0.3 +0.4 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.0 +0.2 -0.2 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.1 -0.3 -0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.1 +0.1 +0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.1 -0.1 +0.1 -0.2
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.1 -0.0 +0.1 -0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.1 +0.1 -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.1 +0.2 -0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.0 -0.1 -0.1 -0.0 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.2 +0.2 -0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.2 +0.2 -0.1 +0.1
mixed community no phage control BHIS no phage control with 14 member community +0.0 -0.0 +0.2 -0.2 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.0 -0.0 -0.1 +0.2 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.1 +0.1 -0.2 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.2 +0.1 -0.0 +0.1
no phage control BHIS_CaCl2 no phage control -0.0 -0.2 +0.2 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.1 -0.1 +0.3 +0.2
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