Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04454 and EFB2_04455 are separated by 27 nucleotidesEFB2_04455 and EFB2_04456 are separated by 228 nucleotidesEFB2_04456 and EFB2_04457 are separated by 11 nucleotidesEFB2_04457 and EFB2_04458 are separated by 180 nucleotides EFB2_04454: EFB2_04454 - Toxin GhoT, at 4,673,123 to 4,673,296 _04454 EFB2_04455: EFB2_04455 - Endoribonuclease antitoxin GhoS, at 4,673,324 to 4,673,620 _04455 EFB2_04456: EFB2_04456 - putative protein YjdJ, at 4,673,849 to 4,674,121 _04456 EFB2_04457: EFB2_04457 - hypothetical protein, at 4,674,133 to 4,674,363 _04457 EFB2_04458: EFB2_04458 - Sensor histidine kinase DcuS, at 4,674,544 to 4,676,175 _04458
Group Condition EFB2_04454 EFB2_04455 EFB2_04456 EFB2_04457 EFB2_04458
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 -0.4 -0.2 -0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.3 -0.1 +0.0 -0.2 +0.1
no phage control BHIS_CaCl2 no phage control -0.8 +0.1 +0.2 -0.5 +0.5
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.4 -0.1 +0.2 -0.2 +0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.1 +0.1 -0.4 +0.2 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 -0.3 -0.1 -0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.2 -0.4 +0.1 -0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.3 +0.1 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 +0.2 -0.1 -0.2 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.5 -0.2 -0.1 -0.0 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.4 +0.1 -0.1 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.4 -0.2 +0.2 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.2 +0.3 -0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.4 +0.3 -0.1 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 +0.2 +0.1 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.3 +0.1 +0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 +0.2 +0.2 -0.2
no phage control BHIS no phage control -0.1 +0.0 +0.3 +0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.3 -0.1 +0.1 +0.1
mixed community no phage control BHIS no phage control with 14 member community +0.3 +0.2 +0.1 -0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.3 +0.0 +0.5 -0.1
mixed community no phage control BHIS no phage control with 14 member community +0.3 +0.1 +0.2 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 +0.1 +0.3 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.5 +0.2 +0.2 -0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.2 -0.0 +0.3 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 +0.1 +0.8 +0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.3 +0.1 +0.2 -0.0
mixed community no phage control BHIS no phage control with 14 member community +0.1 +0.5 +0.0 +0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.4 -0.0 +0.4 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.3 +0.2 +0.1 +0.3 -0.1
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