Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04392 and EFB2_04393 are separated by 43 nucleotidesEFB2_04393 and EFB2_04394 are separated by 275 nucleotidesEFB2_04394 and EFB2_04395 are separated by 15 nucleotidesEFB2_04395 and EFB2_04396 are separated by 336 nucleotides EFB2_04392: EFB2_04392 - 60 kDa chaperonin, at 4,612,265 to 4,613,911 _04392 EFB2_04393: EFB2_04393 - 10 kDa chaperonin, at 4,613,955 to 4,614,248 _04393 EFB2_04394: EFB2_04394 - L-methionine/branched-chain amino acid exporter YjeH, at 4,614,524 to 4,615,780 _04394 EFB2_04395: EFB2_04395 - hypothetical protein, at 4,615,796 to 4,616,272 _04395 EFB2_04396: EFB2_04396 - Aspartate ammonia-lyase, at 4,616,609 to 4,618,045 _04396
Group Condition EFB2_04392 EFB2_04393 EFB2_04394 EFB2_04395 EFB2_04396
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae N.D. N.D. +0.0 -0.1 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. -0.1 -0.1 -0.4
mixed community no phage control BHIS no phage control with 14 member community N.D. N.D. +0.0 -0.2 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community N.D. N.D. +0.1 -0.1 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. +0.0 -0.0 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. +0.0 -0.0 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community N.D. N.D. -0.0 -0.1 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. -0.1 +0.1 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. -0.1 -0.1 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. +0.0 -0.1 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. -0.0 +0.0 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community N.D. N.D. +0.0 -0.0 -0.3
mixed community no phage control BHIS no phage control with 14 member community N.D. N.D. -0.1 +0.1 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. -0.1 +0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. -0.0 +0.1 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. N.D. +0.1 +0.0 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. +0.0 +0.1 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. +0.0 +0.1 -0.3
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae N.D. N.D. -0.0 +0.1 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. +0.1 -0.0 -0.3
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae N.D. N.D. +0.0 +0.1 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. +0.0 +0.2 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. -0.0 +0.2 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae N.D. N.D. -0.0 +0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. N.D. -0.0 +0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. N.D. +0.0 +0.1 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. -0.0 +0.2 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. -0.0 +0.2 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. +0.0 +0.2 -0.2
no phage control BHIS_CaCl2 no phage control N.D. N.D. +0.0 +0.4 -0.1
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