Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04375 and EFB2_04376 are separated by 21 nucleotidesEFB2_04376 and EFB2_04377 are separated by 150 nucleotidesEFB2_04377 and EFB2_04378 are separated by 263 nucleotidesEFB2_04378 and EFB2_04379 are separated by 324 nucleotides EFB2_04375: EFB2_04375 - Phosphatidylserine decarboxylase proenzyme, at 4,595,444 to 4,596,412 _04375 EFB2_04376: EFB2_04376 - Miniconductance mechanosensitive channel MscM, at 4,596,434 to 4,599,757 _04376 EFB2_04377: EFB2_04377 - Inner membrane transporter YjeM, at 4,599,908 to 4,601,365 _04377 EFB2_04378: EFB2_04378 - Elongation factor P--(R)-beta-lysine ligase, at 4,601,629 to 4,602,606 _04378 EFB2_04379: EFB2_04379 - Fumarate reductase flavoprotein subunit, at 4,602,931 to 4,604,739 _04379
Group Condition EFB2_04375 EFB2_04376 EFB2_04377 EFB2_04378 EFB2_04379
no phage control BHIS_CaCl2 no phage control -1.2 +0.1 -0.2 N.D. -1.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.8 +0.1 -0.1 N.D. -0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.3 +0.0 +0.0 N.D. -0.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.0 -0.0 N.D. -0.7
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.0 -0.1 N.D. -0.5
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.1 +0.0 N.D. -0.6
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.0 -0.0 N.D. -0.7
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.1 -0.0 N.D. -0.6
no phage control BHIS_CaCl2 no phage control -0.3 +0.0 +0.0 N.D. -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.0 -0.1 N.D. -0.6
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.1 -0.1 N.D. -0.6
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.2 -0.1 -0.0 N.D. -0.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 -0.0 -0.1 N.D. -0.6
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.0 +0.0 N.D. -0.6
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.1 +0.1 N.D. -0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 -0.0 -0.1 N.D. -0.6
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.0 +0.1 N.D. -0.6
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.0 +0.1 N.D. -0.5
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 -0.0 N.D. -0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 -0.0 -0.0 N.D. -0.6
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.0 +0.1 N.D. -0.6
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 +0.1 -0.1 N.D. -0.6
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.3 +0.0 +0.0 N.D. -0.6
mixed community no phage control BHIS no phage control with 14 member community +0.2 +0.0 +0.1 N.D. -0.5
no phage control BHIS_CaCl2 no phage control +0.2 +0.1 -0.0 N.D. -0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.4 -0.1 -0.0 N.D. -0.4
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.3 +0.0 +0.0 N.D. -0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 +0.0 +0.2 N.D. -0.4
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.5 +0.1 -0.0 N.D. -0.4
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.7 +0.0 -0.0 N.D. -0.5
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