Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04362 and EFB2_04363 are separated by 75 nucleotidesEFB2_04363 and EFB2_04364 are separated by 85 nucleotidesEFB2_04364 and EFB2_04365 overlap by 8 nucleotidesEFB2_04365 and EFB2_04366 are separated by 9 nucleotides EFB2_04362: EFB2_04362 - GTPase HflX, at 4,583,852 to 4,585,132 _04362 EFB2_04363: EFB2_04363 - RNA-binding protein Hfq, at 4,585,208 to 4,585,516 _04363 EFB2_04364: EFB2_04364 - tRNA dimethylallyltransferase, at 4,585,602 to 4,586,552 _04364 EFB2_04365: EFB2_04365 - DNA mismatch repair protein MutL, at 4,586,545 to 4,588,392 _04365 EFB2_04366: EFB2_04366 - N-acetylmuramoyl-L-alanine amidase AmiB, at 4,588,402 to 4,589,739 _04366
Group Condition EFB2_04362 EFB2_04363 EFB2_04364 EFB2_04365 EFB2_04366
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.3 -3.3 -0.2 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.4 -3.1 -0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.5 -2.8 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 -0.5 -2.8 -0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.7 -2.5 -0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.0 -0.4 -2.7 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 -0.6 -2.5 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.5 -2.4 -0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.0 -0.5 -2.4 -0.2 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.6 -2.5 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.0 -0.6 -2.4 -0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.5 -2.5 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.5 -2.4 -0.2 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.5 -2.5 -0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.4 -2.1 -0.3 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 -0.5 -2.3 -0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.4 -2.3 -0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.4 -2.3 -0.1 +0.1
no phage control BHIS no phage control +0.0 -0.3 -2.3 -0.2 -0.1
no phage control BHIS_CaCl2 no phage control -0.3 +0.5 -2.7 -0.2 -0.1
mixed community no phage control BHIS no phage control with 14 member community +0.0 -0.5 -2.3 -0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.0 -0.5 -2.1 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.4 -2.2 -0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 -0.3 -2.4 -0.2 +0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.0 -0.4 -2.3 -0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.0 -0.5 -2.1 -0.2 +0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.0 -0.3 -2.4 -0.0 -0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 -0.4 -2.1 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.4 -2.2 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.3 -2.2 -0.1 +0.2
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