Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04355 and EFB2_04356 are separated by 90 nucleotidesEFB2_04356 and EFB2_04357 are separated by 38 nucleotidesEFB2_04357 and EFB2_04358 are separated by 204 nucleotidesEFB2_04358 and EFB2_04359 are separated by 103 nucleotides EFB2_04355: EFB2_04355 - 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB, at 4,575,887 to 4,576,618 _04355 EFB2_04356: EFB2_04356 - Ribonuclease R, at 4,576,709 to 4,579,150 _04356 EFB2_04357: EFB2_04357 - HTH-type transcriptional repressor NsrR, at 4,579,189 to 4,579,614 _04357 EFB2_04358: EFB2_04358 - Adenylosuccinate synthetase, at 4,579,819 to 4,581,117 _04358 EFB2_04359: EFB2_04359 - hypothetical protein, at 4,581,221 to 4,581,418 _04359
Group Condition EFB2_04355 EFB2_04356 EFB2_04357 EFB2_04358 EFB2_04359
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.1 -0.7 -1.4 -0.2
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.3 -0.2 -0.2 -1.5 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.2 -0.2 -0.3 -1.5 -0.1
mixed community no phage control BHIS no phage control with 14 member community -0.1 -0.2 -0.4 -1.5 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.1 -0.3 -1.7 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.2 -0.0 -1.8 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.1 +0.0 -1.6 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.0 -0.2 -0.3 -1.4 -0.0
mixed community no phage control BHIS no phage control with 14 member community -0.0 -0.1 -0.5 -1.4 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.1 -0.3 -1.5 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.2 -0.1 -1.6 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.2 -0.2 -1.8 +0.1
mixed community no phage control BHIS no phage control with 14 member community -0.1 -0.3 -0.4 -1.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 -0.1 -0.3 -1.5 -0.0
no phage control BHIS_CaCl2 no phage control -0.6 +0.1 -1.0 -0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.2 -0.2 -1.6 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.1 -0.2 -0.3 -1.4 +0.2
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 -0.3 -0.3 -1.2 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.0 -0.2 -0.3 -1.2 -0.0
no phage control BHIS_CaCl2 no phage control -0.0 -0.3 -0.3 -1.3 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.1 -0.3 -1.3 +0.1
no phage control BHIS_CaCl2 no phage control -0.1 -0.2 -0.3 -1.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 -0.2 -0.2 -1.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.1 -0.3 -1.2 -0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.1 -0.2 -1.3 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.1 -0.3 -1.3 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.0 -0.4 -1.3 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.1 -0.2 -1.3 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.2 -0.3 -1.0 +0.1
no phage control BHIS no phage control -0.1 -0.1 -0.3 -0.8 +0.3
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