Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04321 and EFB2_04322 are separated by 217 nucleotidesEFB2_04322 and EFB2_04323 overlap by 17 nucleotidesEFB2_04323 and EFB2_04324 are separated by 213 nucleotidesEFB2_04324 and EFB2_04325 are separated by 9 nucleotides EFB2_04321: EFB2_04321 - FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase, at 4,547,290 to 4,547,910 _04321 EFB2_04322: EFB2_04322 - hypothetical protein, at 4,548,128 to 4,548,766 _04322 EFB2_04323: EFB2_04323 - HTH-type transcriptional repressor NicS, at 4,548,750 to 4,549,397 _04323 EFB2_04324: EFB2_04324 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 4,549,611 to 4,550,402 _04324 EFB2_04325: EFB2_04325 - hypothetical protein, at 4,550,412 to 4,551,254 _04325
Group Condition EFB2_04321 EFB2_04322 EFB2_04323 EFB2_04324 EFB2_04325
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.2 -0.1 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.3 -0.1 -0.1 +0.2 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.2 -0.1 -0.1 -0.1
no phage control BHIS_CaCl2 no phage control -0.2 -0.0 +0.2 -0.0 -0.0
mixed community no phage control BHIS no phage control with 14 member community -0.1 +0.1 -0.0 +0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.1 +0.1 -0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.1 +0.1 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.3 -0.2 +0.2 +0.3 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.2 +0.1 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.1 +0.2 +0.0 -0.0
no phage control BHIS no phage control +0.0 -0.0 +0.1 +0.2 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.2 -0.0 +0.3 +0.0 +0.0
no phage control BHIS_CaCl2 no phage control +0.5 -0.5 +0.1 +0.0 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.2 +0.3 +0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.1 +0.2 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.1 +0.2 +0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.1 +0.3 -0.0 +0.1
mixed community no phage control BHIS no phage control with 14 member community -0.0 -0.1 +0.2 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.0 +0.1 +0.2 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.0 +0.2 +0.2 +0.0
no phage control BHIS no phage control +0.1 -0.1 +0.1 +0.1 +0.0
mixed community no phage control BHIS no phage control with 14 member community +0.2 +0.1 +0.2 +0.0 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.0 +0.1 +0.2 +0.1 -0.1
no phage control BHIS no phage control +0.0 +0.1 +0.2 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 +0.2 +0.2 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.0 +0.1 +0.3 -0.0 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 +0.1 +0.1 +0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.1 +0.1 +0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.0 +0.2 +0.3 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.2 +0.0 +0.3 +0.1 +0.0
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