Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04316 and EFB2_04317 are separated by 88 nucleotidesEFB2_04317 and EFB2_04318 are separated by 107 nucleotidesEFB2_04318 and EFB2_04319 are separated by 107 nucleotidesEFB2_04319 and EFB2_04320 are separated by 44 nucleotides EFB2_04316: EFB2_04316 - hypothetical protein, at 4,542,352 to 4,542,732 _04316 EFB2_04317: EFB2_04317 - Quinone oxidoreductase 2, at 4,542,821 to 4,543,681 _04317 EFB2_04318: EFB2_04318 - Inner membrane protein YtfF, at 4,543,789 to 4,544,754 _04318 EFB2_04319: EFB2_04319 - Iron-sulfur cluster repair protein YtfE, at 4,544,862 to 4,545,524 _04319 EFB2_04320: EFB2_04320 - D-serine/D-alanine/glycine transporter, at 4,545,569 to 4,546,981 _04320
Group Condition EFB2_04316 EFB2_04317 EFB2_04318 EFB2_04319 EFB2_04320
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.1 -0.0 -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 +0.0 -0.2 -0.1 +0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.2 -0.0 -0.0 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.3 -0.0 +0.0 -0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.1 +0.1 -0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.1 -0.1 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.1 -0.0 -0.2 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.3 -0.1 -0.0 -0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.2 -0.1 +0.1 -0.0 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.0 -0.1 -0.1 +0.1
no phage control BHIS no phage control -0.3 +0.1 -0.1 +0.0 +0.0
no phage control BHIS_CaCl2 no phage control -0.1 +0.0 +0.1 -0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.0 -0.0 -0.2 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.0 -0.2 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.1 +0.1 -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 -0.0 -0.1 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.1 -0.1 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.2 +0.1 -0.0 -0.1 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.3 -0.1 -0.0 -0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.2 +0.0 +0.1 +0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.1 -0.1 +0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 -0.0 -0.0 +0.1 -0.1
mixed community no phage control BHIS no phage control with 14 member community -0.1 -0.0 +0.1 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.0 +0.0 +0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 +0.1 +0.1 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.0 +0.2 +0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.1 +0.0 +0.0 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 -0.0 +0.1 +0.1 +0.0
no phage control BHIS no phage control +0.1 +0.0 +0.1 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 -0.0 +0.1 +0.2 +0.0
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