Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04302 and EFB2_04303 overlap by 14 nucleotidesEFB2_04303 and EFB2_04304 are separated by 13 nucleotidesEFB2_04304 and EFB2_04305 are separated by 212 nucleotidesEFB2_04305 and EFB2_04306 are separated by 309 nucleotides EFB2_04302: EFB2_04302 - Inner membrane ABC transporter permease protein YjfF, at 4,523,924 to 4,524,919 _04302 EFB2_04303: EFB2_04303 - Inner membrane ABC transporter permease protein YtfT, at 4,524,906 to 4,525,928 _04303 EFB2_04304: EFB2_04304 - Fructose import ATP-binding protein FruK, at 4,525,942 to 4,527,444 _04304 EFB2_04305: EFB2_04305 - ABC transporter periplasmic-binding protein YtfQ, at 4,527,657 to 4,528,613 _04305 EFB2_04306: EFB2_04306 - Inorganic pyrophosphatase, at 4,528,923 to 4,529,453 _04306
Group Condition EFB2_04302 EFB2_04303 EFB2_04304 EFB2_04305 EFB2_04306
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.1 -0.2 -0.1 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.2 -0.0 +0.0 N.D.
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.0 -0.1 -0.1 -0.1 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.0 -0.1 -0.0 N.D.
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.2 +0.0 +0.0 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.1 -0.1 -0.0 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.0 +0.0 -0.2 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.0 +0.0 -0.2 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.0 -0.1 -0.1 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.1 -0.1 -0.1 N.D.
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.2 +0.1 -0.1 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.2 -0.1 +0.1 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.1 -0.1 +0.0 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 +0.0 -0.1 -0.1 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.0 -0.1 +0.1 -0.1 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.4 +0.1 +0.1 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.0 +0.1 -0.1 N.D.
no phage control BHIS_CaCl2 no phage control -0.1 -0.1 -0.0 +0.1 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 +0.1 -0.1 -0.0 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 +0.1 +0.1 -0.0 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 +0.1 +0.1 -0.2 N.D.
mixed community no phage control BHIS no phage control with 14 member community -0.0 +0.1 +0.1 -0.1 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.1 +0.0 -0.1 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 +0.1 +0.0 -0.1 N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.0 +0.1 +0.1 +0.0 N.D.
mixed community no phage control BHIS no phage control with 14 member community -0.1 +0.2 +0.1 -0.0 N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.1 -0.1 +0.0 N.D.
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.1 +0.0 +0.2 +0.1 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 +0.0 +0.2 -0.0 N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.2 +0.1 +0.0 N.D.
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EFB2_04302
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EFB2_04303
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EFB2_04306
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